How to build a phylogenetic tree (breast cancer samples)
I would like to build a phylogenetic tree for around 40-50 patients with breast cancer based on SNP and CNAs I was asked for it by a fellow biologist, I am completely new to phylogenetics and I have no clue where to start. Do you have any recommendations on pipelines or brief steps I should follow as well as any good tools?
Thank you
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For hierarchical clustering, you can use
hclustin R. Here some examples in a tutorial.