This is a test version of Biostars. For the public version, visit https://www.biostars.org.
juicer.sh problem !

Trying to run sample files from here: https://github.com/aidenlab/juicer/wiki/Installation , but it returns this problem:

(-: /home/app/Desktop/apps/Juicer/scripts/splits/HIC003_S2_L001_001.fastq.gz.sam created successfully.
awk: /home/app/Desktop/apps/Juicer//scripts/common/chimeric_blacklist.awk: line 503: function and never defined
awk: /home/app/Desktop/apps/Juicer//scripts/common/chimeric_blacklist.awk: line 503: function and never defined
awk: /home/app/Desktop/apps/Juicer//scripts/common/chimeric_blacklist.awk: line 503: function and never defined
awk: /home/app/Desktop/apps/Juicer//scripts/common/chimeric_blacklist.awk: line 503: function and never defined
awk: /home/app/Desktop/apps/Juicer//scripts/common/chimeric_blacklist.awk: line 503: function and never defined
***! Failure during chimera handling of /home/app/Desktop/apps/Juicer/scripts/splits/HIC003_S2_L001_001.fastq.gz

Any ideas?

rna-seq
• 2,611 views • link
updated by Biostar Biostar • written by dimitrischat dimitrischat

1 answer

Their github repository might be a better place to post this kind of issue:

https://github.com/aidenlab/juicer/issues

• 1 views • link
written by Gautier Richard Gautier Richard

Log in to answer this question.

More posts like this