How map hundreds of chemical formulae to KEGG pathways simultaneously
When I go to KEGG LIGAND (https://www.kegg.jp/kegg/ligand.html#rdb) and use the "Search Compund" specifying "formula" (i.e. C12H24O11) I do obtain a result, which includes i..e the Galactose metabolism pathway.
It is great for one chemical formula. But now I have hundreds. Is there any suggestions on how to do this as batch search?
Many thanks!
1 answer
Do you have any other ID, like HMDB?
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Kevin Blighe
You can search for the HMDB ID from the formula: http://www.hmdb.ca/
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Kevin Blighe
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