stand-alone pre-miRNA prediction packages
0
0
Entering edit mode
5.3 years ago
pengchy ▴ 450

Hi, after a while searching and investigation, I couldn't found a user-friendly available package for pre-miRNA prediction or classification, although large number of this kind of packages have been published since 2003. The following packages have been tested failed.

  • Triplet-SVM: Need contact the author for download. No response from the author.
  • miPred: could be downloaded from this link , but without documentation on how to predict customized sequences.
  • microPred: could be downloaded from this link. but failed testing with problem (./miPred/ViennaRNA-1.6.4/Perl/blib/arch/auto/RNA/RNA.so: undefined symbol: Perl_Tstack_sp_ptr)
  • MiRenSVM: Still waiting for the author's sending the package.

The following packages have been tested successfully:

There are also several web-server for pre-miRNA identification, but all limit the number of uploaded sequences, at most 50 sequences.

Could anyone recommend an available and user-friendly package for pre-miRNA classification?

pre-miRNA prediction stand-alone package • 920 views
ADD COMMENT

Login before adding your answer.

Traffic: 2544 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6