Hello,

I am running an RNA-seq pipeline involving Cuffmerge, Cuffcompare, and Cuffnorm tools, at Galaxy main instance, respectively.

Even though I add the Gencode annotation files in the Cuffmerge and Cuffcompare steps, I ended up having the tracking id's but not the gene ids of Cuffnorm output files.

Can you please tell how to insert gene id's to the Cuffnorm output?

Thanks in advance,

Deniz