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Associating DNA methylation and nucleosome occupancy with AS events

I have extracted different splicing events from Arabidopsis RNA-Seq data using SUPPA, generated nucleosome profiles using iNPS, and did methylation calling using BISMARK. I would like to associate DNA methylation and nucleosome occupancy wth AS patterns as shown in the link below. I would highly appreciate if someone can guide me to a tool(s) or direct me to a strategy to do so https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3362759/figure/F1/

alternative splicing epigenetic
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updated by biostart biostart • written by i.jabre26 • i.jabre26

1 answer

You can use for this either NucTools (https://homeveg.github.io/nuctools/) or HOMER (http://homer.ucsd.edu/homer/).

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written by biostart biostart

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