Ignore SAM header section using awk
Hi all,
I'm using awk to filter my sam file (aligned_reads.sam) using a text file (values.txt). I need to tell it to ignore the first few lines (header section) of the sam file. Any ideas how I can specify that within this code?
awk 'FNR==NR { a[$1]; next } !($3 in a)' values.txt aligned_reads.sam > filtered_aligned_reads.sam
Thx
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