How to perform fusion search with Hisat2?
I need fusion genes, but also need to use hisat, I don't know how to do fusion search with hisat.
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abdul.suboor123 •
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I do not believe it is yet implemented in HISAT2: https://github.com/DaehwanKimLab/hisat2/issues/8
Other fusion detection programs: A: Gene Fusion Detection: Rna-Seq Data
Kevin
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Kevin Blighe
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Thanks @Kevin Blighe , I visited the link you provided, but there is no any solution about the problem, they are also still trying to develop it. Yeah At least I came to know that they are still developing it , not yet developed. Thanks.
You may want to take a look at other programs:
@Kevin Blighe Thank you, I will try on those packages mentioned in the nature article.