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ATAC-seq transcription factor binding prediction

Hi,

I am trying to predict transcription factor binding sites from ATAC-seq data, for which I also have matched RNA-seq. I have read a lot of papers recently suggesting different methods for doing this (all of which claim that they are better than the other techniques). I was wondering whether anyone had experience with these different methods, and whether they would recommend any?

I am very confused by all of the available options so would appreciate some guidance!

Thanks,

Lucy

atac-seq rna-seq transcription factor
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updated by am2622 • am2622 • written by Lucy • Lucy

Which tools did you review?

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written by ATpoint ATpoint

Hi Lucy I am going through the same process, have you found a good software to start with?

Thanks,

Anyi

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written by am2622 • am2622

I still haven't worked out the best way to do this. Have you had any luck?

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written by Lucy • Lucy

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