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small rna seq

hi

i have primer sequences seen in my RNA seq data and is visible as over represented sequence. should i remove the primer seq? if so how?

plz help

rna-seq primer

Hello shafnaasmy.v.s!

Please use the search function with the query 'adapter trimming' both here and on google. This topic has been discussed extensively before. As a starting point, use this thread. Common tools are BBduk from BBmap suite, trimmomatic, cutadapt, skewer and many others.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

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