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Scaling Data error on Seurat

Here's my code below. I don't know why scaling the data gives me an error. Any help will be appreciated. Thank you

ctrl.data <- Read10X(data.dir = "/Users/kech/Desktop/stim")

stim.data <- Read10X(data.dir = "/Users/kech/Desktop/stim")

ctrl.data <- Read10X(data.dir = "/Users/kech/Desktop/ctrl")

stim.data <- Read10X(data.dir = "/Users/kech/Desktop/stim")

ctrl <- CreateSeuratObject(raw.data = ctrl.data, project = "ASTHMA_CTRL", min.cells = 5)

ctrl@meta.data$stim <- "CTRL"

ctrl <- FilterCells(ctrl, subset.names = "nGene", low.thresholds = 500, high.thresholds = Inf)

ctrl <- NormalizeData(ctrl)

ctrl <- ScaleData(ctrl, display.progress = F)

Error in if (display.progress) { : argument is not interpretable as logical In addition: Warning message: In if (display.progress) { :the condition has length > 1 and only the first element will be used

r rna-seq
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updated by vinvan vinvan • written by Bios • Bios

Please use the format bar to indicate code.

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written by ATpoint ATpoint

1 answer

Does setting display.progress = FALSE instead of display.progress = F help? Looks like you might have defined F already before this...

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written by vinvan vinvan

Thank you! It worked with display.progress = FALSE

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written by Bios • Bios

Hello Biostars,

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If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one if they work. Upvote|Bookmark|Accept

Please do the same for your previous posts as well.

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written by Devon Ryan Devon Ryan

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