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protein profile from alignment

Hey is there a tool like biopython or cmd program that do profile from protein alignment? And a tool that can comparison profile from db of profiles?

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protein alignment python profile
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updated by Ram Ram • written by Xylanaser Xylanaser

that do profile from protein alignment

that can comparioson profile from db of profiles

You'll have to explain what you are looking for a bit more in detail.

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written by WouterDeCoster WouterDeCoster

I mean - from protein alignment make a profile (somekind ie. freq profiles) I found EMBOSS prophecy. Did someone know something else? And the problem I've got is to find database of well prepered profiles. And program which do comparison of those profiles. could you recommend something?

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written by Xylanaser Xylanaser

3 answers

Pfam is a good database of profiles, and HMMER is the program used to create and compare these profiles.

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written by h.mon h.mon

HHmake will make hmm profile & hhsearch will compare query profile to db of profiles.

https://github.com/soedinglab/hh-suite

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written by fishgolden fishgolden

Hey, for that first you just open the original post and after that, you will do it by visiting the options which are log in and just do it and work with it. For further about it, epson printer error code 0xf1 just visit with it.

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written by kuldeep121440 • kuldeep121440

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