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5.5 years ago
Roxana
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0
I try to use getDiffExpressedGenes for DEG analysis over LUSC. but when I try to get data using getFirehoseData I got error of no RNA_Seq and when I browse firebrowse, I found that there is no RNASeqGene in firehose. would you please help me how can I conver GDCQuery data to firehose data to run getDiffExpressedGenes or is there any similar workflow to find DEGs?
TCGAbiolinks? that works with GUI have you tried it?
Yes it is not included there as well