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Python Script to Calculate Total Number of genes

This is the HCV Genome Sequence:

>GU294484.1 Hepatitis C virus isolate PK-1, complete genome
ACCTGCCTCTTACGAGGCGACACTCCACCATGGATCACTCCCCTGTGAGGAACTACTGTCTTCACGCAGAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTGCAGCCTCCAGGACCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCAGGACGACCGGGTCCTTTCTTGGATAAACCCGCTCAATGCCTGGAGATTTGGGCGTGCCCCCGCAAGACTGCTAGCCGAGTAGTGTTGGGTCGCGAAAGGCCTTGTGGTACTGCCTGATAGGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCAACATGAGCACACTTCCTAAACCTCAAAGAAAAACCAAAAGAAAACCCATCCGTCGCCCACAGGACGTCAAGTTCCCGGGTGGCGGACAGATCGTTGGTGGAGTATACGTGTTGCCGCGCAGGGGCCCACGATTGGGTGTGCGCGCGACGCGTAAGGCTTCTGAACGGTCACAGCCTCGCGAACGACGACAGCCTATCCCCAAGGCGCGTCGGAGCGAAGGCCGGTCCTGGGCTCAGCCTGGGTACCCTTGGCCCCTCTATGGTAATGAGGGCTGCGGGTGGGCAGGGTGGCTCCTGTCCCCCCGCGGCTCCCGTCCATCTTGGGGCCCAAACGACCCCCGGCGAAGATCCCGCAACTTGGGTAAAGTCATCGATACCCTTACGTGCGGATTCGCCGACCTCATGGGGTACATCCCGCTCGTCGGCGCTCCCGTAGGAGGCGTCGCAAGAGCCCTCGCGCATGGCGTGAGGGCCCTTGAAGACGGGATAAATTTTGCGACAGGGAACTTGCCCGGTTGCTCCTTTTCTATCTTCCTTCTTGCTCTACTCTCTTGCTTAATTCATCCAGCAGCCAGTCTAGAGTGGCGGAATACGTCTGGTCTCTATGTCCTTACCAACGCCCGTTCCAACAGCAGTATAGTGTACGAGGCCGACGACGTTATCCTGCACACACCCGGCTGTATACCTTGTGTTCAGACCGGCAACACATCCAAGTGCTGGACCCCAATGACACCCACGGTGGCAGTTAAGTATGTCGGAGCAACCACCGCTTCGATACGCGGTCATGTGGACCTGTTAGTGGGCGCAGCCACGATGTGTTCTGCGCTCTACGTGGGTGATGTGTGCGGAGCCGTCTTCCTCGTGGGGCAAGCCTTCACGTTCAGGCCGCGACGCCATCAAACGGTCCAGACCTGCAACTGCTCGCTGTACCCAGGCCATCTCACAGGACATCGAATGGCTTGGGATATGATGATGAACTGGTCCCCTGCTGTTGGCATGGTGGTGGCGCACATCTTACGCCTACCCCAGACCCTGTTTGATATAATAGCCGGGGCCCATTGGGGCGTCTTGGCGGGTCTAGCCTACTATACCATGCAGGGCAACTGGGCCAAGGTCGCAATCATCATGGTTATGTTCTCAGGGGTCGATGCCGTTACGTACATCACTGGGGGCACTGCAGCTCGTGGGGGCCAAGGGCTGGCTAGCCTAATCGTCCGGGGGCCTGAGCAGCGCCTGGAGCTGATCAACACCCATGGCTCGTGGCACATCAACAGTACTGTCCTCCACTGCAATGAGTCCATAAACACAGGGTTTATAGCTGGGTTGTTTTATTATCATAAGTTCAACTTACTGGATGTCCCGAAGGCTCAGCAGCTGCAAGCCCATCACTTTCTTCAGGCAGGGGTGGGGCCCCTTGACAGATGCCAACATCCACCGGCCCTTCTGATGACAACCGTACTGCTGGCATACGCACCTAGACCTTGTGACAGCGTAAAGCAGCACGTGTCTCCGGTCCTGTGTATGCTTCCACACCATCGCCCAGTGGTGGTAGGCACTACTGATCCTAAGGGCGCTCCCACCTATAACTGGGGCGAGAATGAGACAGACGTGTTCCTGCTGAATCCCTGCGGCCTCCTAGTGGTCGGTGGTTTGGGTGGCACGTGGGAGGAACTCCACCGGGGTTTGTCAAGACGTGCGGAGGTTCCCCCTTGTGACATCTATGGGGGTGGGGGGGAGATCCACCAATGGTTCAGACCTCTTCTGCCCCACCGACTGCTTCAGGAAACATCCCGAGGCCACATACAGCCGGTGCGGCTCGGGGCCCTGGTTGACACCTCGATGCATGGTCGACTATCCATACCGGCTTTGGCATTACCCATGTACAGTCAATTTTACACTGTTCAAGGTGAGGATGTTTGTGGGTGGGTTTGGCATCGGTTTACCGCCGCTTGCAACTGGACTAGGGGGGAGCGCTGCGATATCGAGGATCGTGACCGCAGCGAGCAACATCCCCTGCTGCATTCAACAACTGAGCTTGCCATACTGCCTTGCTCTTTCACGCCCATGCCCGCATTGTCAACAGGGTTAATACACCTCCACCAAAACATCGTGGATGTCCAATACCTTTATGGCGTTGGATCTGGCATGGTGGGATGGGCGTTGAAATGGGAATTTGTCATCCTCGTTTTCCTCCTCCTAGCAGATGCACGCGTGTGCGTTGCCCTTTGGCTGATGCTGATGATATCACAAGCAGAAGCAGCCTGGAGAACTTGTCACGCTGAACGCCGTCTCTGCTGCCGGGACACATGGTATCGGCTGGTACCTGGTAGCATTTTGCGCGGCGTGGTACGTGCGGGGAAACTCGTCCCGCTGGTGACCTACAGCCTGACGGGTCTTTGGTCCCTAGCATTGCTCGTCCTTCTACTCCCCCAGCGGGCGTATGCTTGGTCGGGTGAAGACAGTGCCACCCTCGGCGCTGGGATCTTGGTCCTCTTCGGCTTCTTTACCCTGTCACCTTGGTATAAGCACTGGATCAGCCGCCTCATGTGGTGGAACCAGTACGCCATATGTAGGTGTGAGTCTGCTCTCCAAGTATGGGTCCCCCCCCTACTTGCCCGCGGGAGTAGGGACGGTGTTATCCTGCTAACAAGCCTGCTTTATCCATCATTAGTTTTTGACATCGCTAAGCTGCTGATAGCCGTAATAGGCCCATTATATCTAATACAGGCCGCCATCACTACTACCCCCTACTTTGTGCGTGCGCATGTTCTGGTCCGCCTTTGCATGTTCGTGCGCTCCGTGACGGGGGGAAAGTACTTCCAGATGGCCATACTGAGCGTCGGCAGATGGTTTAACACCTACCTATATGACCACCTTGCACCGATGCAACACTGGGCCGCAGCAGGCCTCAAAGACCTGGCAGTAGCCACTGAACCTGTAATATTCAGTCCCATGGAAATCAAGGTCATCACTTGGGGCGCGGACACGGCAGCTTGCGGAGATATCCTATGCGGGCTGCCCGTCTCTGCACGATTAGGCCGTGAGGTGTTGTTGGGACCTGCTGATGACTATCGGGAGATGGGCTGGCGTCTGTTGGCCCCGATTACAGCATACGCCCAGCAAACTAGGCGTCTTTTTGGGACTATTGTGACCAGCTTGACTGGCAGGGACAAGAACGTGGTGGCCGGCGAAGTGCAGGTGCTTTCTACGGCTACCCAGACCTTCCTAGGTACAACATTGGGAGGGGTTATGTGGACTGTTTACCATGGAGCAGGTTCGAGAACACTTGCGGGCGTCAAACATCCTGCGCTCCAAATGTACACAAATGTAGATCAGGACCTCGTTGGATGGCCAGCTCCTCCGGGGGCTAAGTCTCTTGAACCGTGCACCTGCGGGTCTGCGGACTTGTACTTGGTTACCCGCGAAGCTGATGTCATCCCTGCTAGACGCAGGGGGGACTCCACAGCGAGCTTGCTCAGTCCTAGGCCTCTCGCCTGTCTCAAAGGTTCCTCTGGAGGTCCTGTTATGTGCCCTTCGGGCCACGTAGCGGGGATCTTTAGGGCTGCTGTGTGCACCAGAGGTGTAGCAAAAGCCCTACAGTTCATACCAGTGGAAACCCTTAGCACACAGGCTAGGTCTCCATCCTTTTCTGACAATTCAACTCCTCCTGCTGTTCCACAGAGCTATCAAGTAGGGTACCTTCATGCCCCGACCGGCAGCGGTAAGAGCACAAAGGTCCCGGCCGCTTATGTAGCACAAGGATATAATGTTCTCGTGTTGAATCCATCAGTGGCGGCCACACTAGGCTTCGGCTCTTTCATGTCGCGAGCTTATGGGATCGACCCCAACATCCGCACCGGGAACGGCACGGTTACAACTGGTGCTAATCTGACCTATTCCACCTATGGTAAGTTTCTCGCGGACGGGGGTTGCTCGGGGGGAGCATATGATGTGATTATCTGTGATGAGTGTCATGCCCAAGACTCTACTAGCATACTGGGTATAGGCACGGTCCTAGATCAGGCTGAAACGGCTGGGGTGAGGCTGACGGTTTTAGCAACAGCAACTCCCCCAGGCAGCATCATTGGGCCCCATTCTAACCTCAAAGAAGTGGCCCTTGGTTCTGAGGGGGAGATCCCTTTCTTCGGCAAGGCCATACCGCTAGCCCTGCTAAGGGGGAAAGGCACCTTATTTTTTTCCATTCCAAGAAAAAATGTGATGAGATGGCATCCAAACTCAGAGGCATGGGGCTCAACGCTGAAGGAGTACTACAGGGGTCTTGATGTGTCCGTCATACCAACATCAGGAGACGTTGTAGTTTGCGCTACTGACGCCCTCATGACTGGATTCACCGGAGACTTCGACTCTGTCATAGATTGCAACGTGGCTGTTGAACAGTACGTTGATTTCAGCTTGGACCCCACCTTTTCCATTGAGACTCGCACTGCTCCCCAAGACGCGGTTTCCCGCAGTCAACGTCGTGGCCGTACGGGCCGAGGTAGACTCGGCACGTACCGATATGTCACCCCCGGTGAAAGACCGTCTGGGATGTTTGACTCGGCTGTTCTCTGTGAGTGCTATGACGCGGGCTGCTCGTGGTACGACTTGCAGCCCGCCGAGACCACAGTCAGACTAAGAGCTTACTTGTCCACGCCGGGGTTACCTGTCTGCCAAGACCACTTGGAATTTTGGGAGAGCGTCTTCACTGGACTAACTCACATAGATGCCCACTTTCTATCACAGACCAAGCAGCAGGGACTCAACTTCCCATACCTAGCTGCCTACCAAGCCACTGTGTGCGCTCGCGCGCAAGCTCCTCCCCCAAGTTGGGACGAGACATGGAAGTGTCTCGTGCGGCTTAAGCCAACACTACATGGACCTACACCCCTTCGATATCGGCCGGGGCCTGTCCAAAATGAAACCTGCTTGACACACCCCATCACAAAATACCTCATGGCATGCATGTCAGCCGATCTGGAAGTAACCACCAGCACCTGGAGCACCTGGGTGTTGCTCGGAGGGGTCCTCGCGGCCCTGGCAGCCTACTGCTTGTCGGTCGGCTGCGTAGTCATTGTGGGCCACATTGAGCTGGGGGGCAAGCCGGCGCTCGTTCCTGACAAAGAAGTGTTGTATCAACAATACGATGAGATGGAGGAGTGCTCACAAGCTGCCCCATATATCGAACAAGCTCAAGTAATAGCCCACCAGTTCAAGGAAAAAGTCCTTGGATTGCTACAGCGAGCTACCCAACAACAAGCTGTCATTGAGCCCATAGTAGTTACCAACTGGCAAAAGCTTGAGGCCTTCTGGCACAAGCACATGTGGAACTTTGTGAGTGGGATTCAGTACCTAGCAGGTCTCTCCACTTTGCCCGGCAACCCCGCTGTGGCGTCTCTTATGGCGTTCGCTGCTTCAGTCACCAGTCCCCTGACGACCAATCAAACTATGTTTTTTAACATACTCGGGGGATGGGTTGCTACTCATTTGGCAGGGCCCCAGAGCTCTTCCGCATTCGTGGTAAGCGGCTTGGCCGGCGCTGCCATAGGGGGCATAGGCCTGGGCAGGGTCTTACTTGACATCCTGGCAGGATACGGAGCTGGTGTCTCAGGCGCCTTGGTGGCTTTCAAAATCATGGGGGGGGAACTCCCCAATGCCGAGGACGTGGTCAATCTGTTGCCCGCCATACTATCTCCGGGTGCTCTCGTCGTCGGGGTGATATGCGCTGCCCTACTACGTCGGCACGTGGGACCTGGGGAGGGAGCGGTACAGTGGATGAACAGGCTCATCGCGTTCGCATCCCGGGGCAACCACGTCTCACCGACGCACTATGTTCCCGAGAGCGATGCTGCGGCAAGGGTCACCGCATTGCTGAGTTCTCTAACTGTCACAAGTCTGCTCCGGCGGTTACACCAGTGGATCAATGAAGACTACCCAAGCCCTTGTAGCGACGATTGGCTACGTACCATCTGGGACTGGGTCTGCATGGTGTTGCTCGACTTCAAGACATGGCTGTCTGCTAAGATCATGCCATTGCTCCCTGGGTTGCCCTTCATTTCCTGTCAAAAGGGATATAAGGGCGTTTGGCAGGGGGACGGCGTGGTGTCCACTCGCTGTCCTTGCGGAGCAGTGATAACCGGTCATGTGAAGAACGGGTCCATGCGGCTTGCAGGACCACGTACATGTGCTAACATGTGGCACGGCACCTTCCCCATCAACGAGTACACCACCGGACCCAGCACACCTTGCCCATCACCCAACTACACTCGTGCACTGTGGCGCGTGGCTGCCAACAGCTACGTCGAAGTGCGACGGGTGGGAGACTTCCACTACATCACGGGGGCCACAGAAGATGAGCTCAAGTGTCCGTGCCAAGTGCCGGCTGCTGAGTTCTTTACTGAAGTGGATGGGGTGAGACTTCACCGTTACGCCCCTCCATGCAGGCCCCTGTTGAGGGATGAGATCACTTTCGTAGTAGGGCTGAATTCTTACGCGATAGGATCCCAACTCCCTTGTGAGCCCGAACCGGACGTCTCTGTGCTGACCTCGATGTTGAGAGACCCTTCCCATATCACCGCCGAGACGGCAGCGCGCCGCCTTGCACGCGGGTCCCCTCCATCAGAGGCAAGCTCATCCGCCAGTCAACTATCGGCTCCATCGTTGAAGGCCACTTGCCAAACGCATAGGCCTCATCCCGACGCGAGCTGGTGGACGCCAACTTGTGTTTGGCGACAAGAGATGGGCAGCAACATCACACGGGTAGAGTCCGAAACAAAGGTTGTGATTCTTGACTCATTCGAACCTCTGAGGGCCGAGACTGATGACACCGAGCTCTCGGTAGCAGCAGAGTGTTTCAAGAAACCTCCCAAGTATCCTCCAGCCCTCCCTATCTGGGCTAGGCCAGACTACAACCCTCCACTGTTGGATCGTTGGAAATCACCGGATTATGAACCACCAATTGTTCATGGGTGCGCCTTACCACCACAGGGTACTCCACCGGTGCCTCCCCCTCGGAGGAAAAGAACAATCCAGCTGGACGGCTCCAATGTGTCCGCGGCGCTAGCTGCGCTAGCGGAAAAATCATTCCCGGCCTCAAAACCGTTGGAAGCGGGTAGCTCATCCTCAGGGGTCGATACACAGTCCAGCACTACTTCCAAGGTGCCTCCCTCTTCGGAGAGAGAGTCCGACACAGAATCGTGCTCGTCCATGCCTCCTCTCGAGGGGGAGCCGGGCGATCCAGACTTGAGTTGCGACTCTTGGTCCACTGTTAGTGACAGCGAGGAGCAGAGCGTGGTCTGCTGCTCTATGTCGTATTCTTGGACCGACGCCCTGATAACACCATGTAGTGCTGAGGGAGAGAACTGCCCATCAGCCCACTCAGCAATCTTGGAGAGACATCACAACCTAATCTATTCAACGTCGTCTAGAATCGCTTCTCAACGTCAGAAGAAGGTCACCTTCGACAGGCTGCAGGTGCTCGACGACCATTACAAAACTGCATTAAAGGAGATAAAGGAGCGAGCGTCAAGGGTAAAGGCTCGCATGCTCACCATCGAGGAAGCGTGCGCGCTCGTCCCTCCTCACTCTGCTCGGTCAAAGTTCGGGTATAGTGCGAAGGACGCTCGCTCCCTGTCCAGCAAGGCCATTAACCAGATCCGCTCCGTCTGGGAGGACTTGCTGGAAGACACCACAACTCCAATTCCAACCACCATCATGGCGAAGAGCGAGGTTTTTTGTGTGGATCCTACTAAAGGAGGCCGTTTTTTGCTCGTCTCATTGTCTACCCTGACCTGGGGGTGCGCATCTGTGAGAACGTGCCCTATATGGCGTGATACAGAAGTGGGGAGTGGGGACGATGGGTCCTGCCTATGGATTCCAATACTCGCCTCAACAGCGGGTCGAACGTCTGCTGAAGATGTGGACCTCAAAGAAAGCCCAGTTGGGGTTCTCGTATGGTACCCGCTGCTTTGGCTCGACTGCCACTGGACAGGACATCAGGGTGGAAGAGGAGATATACCAATGCTGGAGCCTTGGACCGGAGGCCAGGAAAGTGATCTCCTCCCTCACGGAGCGGCTTTACTGCGGAGGCCCTATGTTCAACAGCAAGGGGGCCCAGTGTGGTTATCGCCGTTGCCGTGCCAGTGGAGTTCTGCCTACCAGCTTCGGCAACACGATCACTTGTTACATCAAGGCCACAGCGGCTGCAAAGGCCGCAAACCTCCGGAAGCCTGGCTTCTTGTTTGGGGAGGATGGATCCTGGTCGTATTACCTGAGGACCGAATGGGGTTCGAATGGAGATACGGGCAGTCCTGGGAGAGCCTTCACCGGAGGCTATGGACCAGGTATTTCTTGCTTCCACCCGGAGATGGCCCCCACAGGCCAACCCTACGACCTTTGGGCTCATTACATCTGGCTCCTCCAACGTCTCCGTGGCGCGGGACGATACGGGGAAGAGGTATTATTACCTCACTCGTGGTGCCACCACCCCCCTGGCCCGTGCTGCTTGGGAGACAGCTCGTCACACTCCAGTTACCTCCTGGCTGGGGAACATCATCATGTACGCGCCTACTATTTGGGTGCGCATGGTGGTGGTGGCACACTTTTTCTCCATACTCCAATCCCAGGAGATACTTGGTCGCCCCCTTGGCTTTGGAATGTACGGGGCCACTTACTCTGTCACTCCGCTGGATTTACCAGCAATCATTGGAAGACTCCATGGTCTACGCGCGTTTACGCTCCATATTTACTCTCCAGCAGAGCTCAATACGGTCGCGGGGACACTCAGGAAGCTTGTGCCCCCCCCTACGAGCTTGGAGACATCGGGCACGAGCAGTGCGCGCTATGCTTATCGCCCAGGGAGGGAAGGCCAGGATTTGTGGGCTTTATCACTTCAATTGGGCGGTACGCACCAAGACCACCCTCACTCCACTGCCAGCCGCTGGCCAGTTGGATTTATCCATCTGGTTTACGGTTGGTGTCGGCGGGAACGACATTCTCGCAGCGTGTCACGCGCCCGAACCCGCCATTTGCTGCTTTGCCTACTCCCTACTAACAGTAGGGGTAGGCATCTTTCTCTTGCCAGCTCGATGAGCTGGTAAGATAACACTCCATTTCTTTTTTGTTTTTTTTTTTTTTTTTTTT

I want to write Python script to Calculate Total Genes present in this 9474 bp sequence. The Start Codon is (ATG) and I want to calculate the genes from all 3 reading frames

hepatatis-c python
• 3,739 views • link
updated by Ram Ram • written by anasjamshed anasjamshed

Sounds like a school project, could you show what you have tried to get a starting point to work on ?

• 1 views • link
written by Bastien Hervé Bastien Hervé 
>>> from Bio.Seq import Seq
>>> genome = open("C:\\Users\\cnn\\Desktop\\MS(BI)\\HCV.txt")                     #( Open .txt file)
>>> print(genome)
 >>> Data=genome.read()                                                    #( Read .txt file)
>>> print (Data)
• 1 views • link
updated by Joe Joe • written by anasjamshed anasjamshed

That is not how you utilise BioPython. Take a look at the link I gave you.

• 1 views • link
written by Joe Joe

Some points :

  • Please use the icon 101010 to format your text as code, it is much more readable
  • Take a look at the Biopython documentation to understand how to read a fasta file (I presume you work with a fasta file)
  • Why does your file has .txt entension if it is a fasta file ?
  • You can not print a file handle like you did with print(genome) (you can... but it is not readable)

Try something like this :

from Bio import SeqIO
for record in SeqIO.parse("C:\Users\cnn\Desktop\MS(BI)\HCV.txt", "fasta"):
    printrecord.id)
    print(record.seq)

Then to go forward and recover informations about ORF, follow the link that jrj.healey gave you

• 1 views • link
written by Bastien Hervé Bastien Hervé

i already used that i want to calculate total number of genes not ORF

• 1 views • link
written by anasjamshed anasjamshed

Then use a proper gene finding tools such as GeneMark or Glimmer.

Writing a python script to identify which ORFs are legitimate genes is not going to be simple.

Alternatively, use an annotation pipeline like PGAP/PROKKA, and then use biopython to count the number of gene or CDS tags that are detected in one of the annotated files.

• 1 views • link
written by Joe Joe

How can i use gene annotation pipeline

• 1 views • link
written by anasjamshed anasjamshed

i want to calculate total number of genes present in my sequence not ORF

• 1 views • link
written by anasjamshed anasjamshed

I want to calculate genes from all 3 reading frames

• 1 views • link
written by anasjamshed anasjamshed

calculate genes

Genes cannot be "calculated". They can be at best "found". The algorithm involved is complex, and cannot be explained over a forum discussion in my opinion.

• 1 views • link
written by Ram Ram

We know that by now. But what you are asking for is a complex task. Not just a simple script. Please read some literature on gene prediction.

• 1 views • link
written by WouterDeCoster WouterDeCoster

What Algorithm can i used?

• 1 views • link
written by anasjamshed anasjamshed

Pick a suitable one from this list, then read their paper and replicate their algorithm.

EDIT:

Please note that your past posts on this topic have been closed because this is not a subject matter any forum can help you on - it's a project that you will need to work on (if you wish to not use the tools available already). If you continue to open questions for this topic, I'm afraid you risk a stronger response from the forum.

• 1 views • link
written by Ram Ram

Sir it is my right to ask any question on this forum until i can get the suitable answer

• 1 views • link
written by anasjamshed anasjamshed

FYI, you're going to be ignored now by all of the regulars on the site, which means you will receive no further help here.

• 1 views • link
written by Devon Ryan Devon Ryan

sorry sir but i can find any suitable answer of my question so thats why i am asking here again and again

• 1 views • link
written by anasjamshed anasjamshed

We have already told you “suitable answers”.

If you did not get an answer you liked the first time around, why would you assume the 2nd or 3rd time would be any different?

• 1 views • link
written by Joe Joe

Sir my question is can i calculate total no of genes present in HCV genome through simple python script and in the reply one person gives me a code from which orfs can be found easily but i want genes to be calculated and then some one said that use GTF file , some said use linux to calculate genes , some said use annotation pipelines and someone said its required complex algorithm But my question is that it is possible or not without algorithm?

• 1 views • link
written by anasjamshed anasjamshed

It is not possible without a more complicated algorithm. This has been explained thoroughly already. Further comments from you about this will be deleted as they are not productive.

• 1 views • link
written by Devon Ryan Devon Ryan

Which Algorithm can i used for this project?

• 0 views • link
written by anasjamshed anasjamshed

Correct, but it is not your right to ask the same question over and over again, all whilst ignoring the correct advice you have been given, because it didn’t answer your exact question (because what you want to do is not sensible).

• 1 views • link
written by Joe Joe

Hello anasjamshed1994!

We believe that this post does not fit the main topic of this site.

The OPs question is beyond what is reasonably able to be assisted on the forum, and this is the second or third iteration of this same thread.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

• 1 views • link
written by Joe Joe

1 answer

So we can say that finding genes through python script is not possible

• 0 views • link
written by anasjamshed anasjamshed

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    written by anasjamshed anasjamshed
    >GU294484.1 Hepatitis C virus isolate PK-1, complete genome ACCTGCCTCTTACGAGGCGACACTCCACCATGGATCACTCCCCTGTGAGGAACTACTGTCTTCACGCAGAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTGCAGCCTCCAGGACCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCAGGACGACCGGGTCCTTTCTTGGATAAACCCGCTCAATGCCTGGAGATTTGGGCGTGCCCCCGCAAGACTGCTAGCCGAGTAGTGTTGGGTCGCGAAAGGCCTTGTGGTACTGCCTGATAGGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCAACATGAGCACACTTCCTAAACCTCAAAGAAAAACCAAAAGAAAACCCATCCGTCGCCCACAGGACGTCAAGTTCCCGGGTGGCGGACAGATCGTTGGTGGAGTATACGTGTTGCCGCGCAGGGGCCCACGATTGGGTGTGCGCGCGACGCGTAAGGCTTCTGAACGGTCACAGCCTCGCGAACGACGACAGCCTATCCCCAAGGCGCGTCGGAGCGAAGGCCGGTCCTGGGCTCAGCCTGGGTACCCTTGGCCCCTCTATGGTAATGAGGGCTGCGGGTGGGCAGGGTGGCTCCTGTCCCCCCGCGGCTCCCGTCCATCTTGGGGCCCAAACGACCCCCGGCGAAGATCCCGCAACTTGGGTAAAGTCATCGATACCCTTACGTGCGGATTCGCCGACCTCATGGGGTACATCCCGCTCGTCGGCGCTCCCGTAGGAGGCGTCGCAAGAGCCCTCGCGCATGGCGTGAGGGCCCTTGAAGACGGGATAAATTTTGCGACAGGGAACTTGCCCGGTTGCTCCTTTTCTATCTTCCTTCTTGCTCTACTCTCTTGCTTAATTCATCCAGCAGCCAGTCTAGAGTGGCGGAATACGTCTGGTCTCTATGTCCTTACCAACGCCCGTTCCAACAGCAGTATAGTGTACGAGGCCGACGACGTTATCCTGCACACACCCGGCTGTATACCTTGTGTTCAGACCGGCAACACATCCAAGTGCTGGACCCCAATGACACCCACGGTGGCAGTTAAGTATGTCGGAGCAACCACCGCTTCGATACGCGGTCATGTGGACCTGTTAGTGGGCGCAGCCACGATGTGTTCTGCGCTCTACGTGGGTGATGTGTGCGGAGCCGTCTTCCTCGTGGGGCAAGCCTTCACGTTCAGGCCGCGACGCCATCAAACGGTCCAGACCTGCAACTGCTCGCTGTACCCAGGCCATCTCACAGGACATCGAATGGCTTGGGATATGATGATGAACTGGTCCCCTGCTGTTGGCATGGTGGTGGCGCACATCTTACGCCTACCCCAGACCCTGTTTGATATAATAGCCGGGGCCCATTGGGGCGTCTTGGCGGGTCTAGCCTACTATACCATGCAGGGCAACTGGGCCAAGGTCGCAATCATCATGGTTATGTTCTCAGGGGTCGATGCCGTTACGTACATCACTGGGGGCACTGCAGCTCGTGGGGGCCAAGGGCTGGCTAGCCTAATCGTCCGGGGGCCTGAGCAGCGCCTGGAGCTGATCAACACCCATGGCTCGTGGCACATCAACAGTACTGTCCTCCACTGCAATGAGTCCATAAACACAGGGTTTATAGCTGGGTTGTTTTATTATCATAAGTTCAACTTACTGGATGTCCCGAAGGCTCAGCAGCTGCAAGCCCATCACTTTCTTCAGGCAGGGGTGGGGCCCCTTGACAGATGCCAACATCCACCGGCCCTTCTGATGACAACCGTACTGCTGGCATACGCACCTAGACCTTGTGACAGCGTAAAGCAGCACGTGTCTCCGGTCCTGTGTATGCTTCCACACCATCGCCCAGTGGTGGTAGGCACTACTGATCCTAAGGGCGCTCCCACCTATAACTGGGGCGAGAATGAGACAGACGTGTTCCTGCTGAATCCCTGCGGCCTCCTAGTGGTCGGTGGTTTGGGTGGCACGTGGGAGGAACTCCACCGGGGTTTGTCAAGACGTGCGGAGGTTCCCCCTTGTGACATCTATGGGGGTGGGGGGGAGATCCACCAATGGTTCAGACCTCTTCTGCCCCACCGACTGCTTCAGGAAACATCCCGAGGCCACATACAGCCGGTGCGGCTCGGGGCCCTGGTTGACACCTCGATGCATGGTCGACTATCCATACCGGCTTTGGCATTACCCATGTACAGTCAATTTTACACTGTTCAAGGTGAGGATGTTTGTGGGTGGGTTTGGCATCGGTTTACCGCCGCTTGCAACTGGACTAGGGGGGAGCGCTGCGATATCGAGGATCGTGACCGCAGCGAGCAACATCCCCTGCTGCATTCAACAACTGAGCTTGCCATACTGCCTTGCTCTTTCACGCCCATGCCCGCATTGTCAACAGGGTTAATACACCTCCACCAAAACATCGTGGATGTCCAATACCTTTATGGCGTTGGATCTGGCATGGTGGGATGGGCGTTGAAATGGGAATTTGTCATCCTCGTTTTCCTCCTCCTAGCAGATGCACGCGTGTGCGTTGCCCTTTGGCTGATGCTGATGATATCACAAGCAGAAGCAGCCTGGAGAACTTGTCACGCTGAACGCCGTCTCTGCTGCCGGGACACATGGTATCGGCTGGTACCTGGTAGCATTTTGCGCGGCGTGGTACGTGCGGGGAAACTCGTCCCGCTGGTGACCTACAGCCTGACGGGTCTTTGGTCCCTAGCATTGCTCGTCCTTCTACTCCCCCAGCGGGCGTATGCTTGGTCGGGTGAAGACAGTGCCACCCTCGGCGCTGGGATCTTGGTCCTCTTCGGCTTCTTTACCCTGTCACCTTGGTATAAGCACTGGATCAGCCGCCTCATGTGGTGGAACCAGTACGCCATATGTAGGTGTGAGTCTGCTCTCCAAGTATGGGTCCCCCCCCTACTTGCCCGCGGGAGTAGGGACGGTGTTATCCTGCTAACAAGCCTGCTTTATCCATCATTAGTTTTTGACATCGCTAAGCTGCTGATAGCCGTAATAGGCCCATTATATCTAATACAGGCCGCCATCACTACTACCCCCTACTTTGTGCGTGCGCATGTTCTGGTCCGCCTTTGCATGTTCGTGCGCTCCGTGACGGGGGGAAAGTACTTCCAGATGGCCATACTGAGCGTCGGCAGATGGTTTAACACCTACCTATATGACCACCTTGCACCGATGCAACACTGGGCCGCAGCAGGCCTCAAAGACCTGGCAGTAGCCACTGAACCTGTAATATTCAGTCCCATGGAAATCAAGGTCATCACTTGGGGCGCGGACACGGCAGCTTGCGGAGATATCCTATGCGGGCTGCCCGTCTCTGCACGATTAGGCCGTGAGGTGTTGTTGGGACCTGCTGATGACTATCGGGAGATGGGCTGGCGTCTGTTGGCCCCGATTACAGCATACGCCCAGCAAACTAGGCGTCTTTTTGGGACTATTGTGACCAGCTTGACTGGCAGGGACAAGAACGTGGTGGCCGGCGAAGTGCAGGTGCTTTCTACGGCTACCCAGACCTTCCTAGGTACAACATTGGGAGGGGTTATGTGGACTGTTTACCATGGAGCAGGTTCGAGAACACTTGCGGGCGTCAAACATCCTGCGCTCCAAATGTACACAAATGTAGATCAGGACCTCGTTGGATGGCCAGCTCCTCCGGGGGCTAAGTCTCTTGAACCGTGCACCTGCGGGTCTGCGGACTTGTACTTGGTTACCCGCGAAGCTGATGTCATCCCTGCTAGACGCAGGGGGGACTCCACAGCGAGCTTGCTCAGTCCTAGGCCTCTCGCCTGTCTCAAAGGTTCCTCTGGAGGTCCTGTTATGTGCCCTTCGGGCCACGTAGCGGGGATCTTTAGGGCTGCTGTGTGCACCAGAGGTGTAGCAAAAGCCCTACAGTTCATACCAGTGGAAACCCTTAGCACACAGGCTAGGTCTCCATCCTTTTCTGACAATTCAACTCCTCCTGCTGTTCCACAGAGCTATCAAGTAGGGTACCTTCATGCCCCGACCGGCAGCGGTAAGAGCACAAAGGTCCCGGCCGCTTATGTAGCACAAGGATATAATGTTCTCGTGTTGAATCCATCAGTGGCGGCCACACTAGGCTTCGGCTCTTTCATGTCGCGAGCTTATGGGATCGACCCCAACATCCGCACCGGGAACGGCACGGTTACAACTGGTGCTAATCTGACCTATTCCACCTATGGTAAGTTTCTCGCGGACGGGGGTTGCTCGGGGGGAGCATATGATGTGATTATCTGTGATGAGTGTCATGCCCAAGACTCTACTAGCATACTGGGTATAGGCACGGTCCTAGATCAGGCTGAAACGGCTGGGGTGAGGCTGACGGTTTTAGCAACAGCAACTCCCCCAGGCAGCATCATTGGGCCCCATTCTAACCTCAAAGAAGTGGCCCTTGGTTCTGAGGGGGAGATCCCTTTCTTCGGCAAGGCCATACCGCTAGCCCTGCTAAGGGGGAAAGGCACCTTATTTTTTTCCATTCCAAGAAAAAATGTGATGAGATGGCATCCAAACTCAGAGGCATGGGGCTCAACGCTGAAGGAGTACTACAGGGGTCTTGATGTGTCCGTCATACCAACATCAGGAGACGTTGTAGTTTGCGCTACTGACGCCCTCATGACTGGATTCACCGGAGACTTCGACTCTGTCATAGATTGCAACGTGGCTGTTGAACAGTACGTTGATTTCAGCTTGGACCCCACCTTTTCCATTGAGACTCGCACTGCTCCCCAAGACGCGGTTTCCCGCAGTCAACGTCGTGGCCGTACGGGCCGAGGTAGACTCGGCACGTACCGATATGTCACCCCCGGTGAAAGACCGTCTGGGATGTTTGACTCGGCTGTTCTCTGTGAGTGCTATGACGCGGGCTGCTCGTGGTACGACTTGCAGCCCGCCGAGACCACAGTCAGACTAAGAGCTTACTTGTCCACGCCGGGGTTACCTGTCTGCCAAGACCACTTGGAATTTTGGGAGAGCGTCTTCACTGGACTAACTCACATAGATGCCCACTTTCTATCACAGACCAAGCAGCAGGGACTCAACTTCCCATACCTAGCTGCCTACCAAGCCACTGTGTGCGCTCGCGCGCAAGCTCCTCCCCCAAGTTGGGACGAGACATGGAAGTGTCTCGTGCGGCTTAAGCCAACACTACATGGACCTACACCCCTTCGATATCGGCCGGGGCCTGTCCAAAATGAAACCTGCTTGACACACCCCATCACAAAATACCTCATGGCATGCATGTCAGCCGATCTGGAAGTAACCACCAGCACCTGGAGCACCTGGGTGTTGCTCGGAGGGGTCCTCGCGGCCCTGGCAGCCTACTGCTTGTCGGTCGGCTGCGTAGTCATTGTGGGCCACATTGAGCTGGGGGGCAAGCCGGCGCTCGTTCCTGACAAAGAAGTGTTGTATCAACAATACGATGAGATGGAGGAGTGCTCACAAGCTGCCCCATATATCGAACAAGCTCAAGTAATAGCCCACCAGTTCAAGGAAAAAGTCCTTGGATTGCTACAGCGAGCTACCCAACAACAAGCTGTCATTGAGCCCATAGTAGTTACCAACTGGCAAAAGCTTGAGGCCTTCTGGCACAAGCACATGTGGAACTTTGTGAGTGGGATTCAGTACCTAGCAGGTCTCTCCACTTTGCCCGGCAACCCCGCTGTGGCGTCTCTTATGGCGTTCGCTGCTTCAGTCACCAGTCCCCTGACGACCAATCAAACTATGTTTTTTAACATACTCGGGGGATGGGTTGCTACTCATTTGGCAGGGCCCCAGAGCTCTTCCGCATTCGTGGTAAGCGGCTTGGCCGGCGCTGCCATAGGGGGCATAGGCCTGGGCAGGGTCTTACTTGACATCCTGGCAGGATACGGAGCTGGTGTCTCAGGCGCCTTGGTGGCTTTCAAAATCATGGGGGGGGAACTCCCCAATGCCGAGGACGTGGTCAATCTGTTGCCCGCCATACTATCTCCGGGTGCTCTCGTCGTCGGGGTGATATGCGCTGCCCTACTACGTCGGCACGTGGGACCTGGGGAGGGAGCGGTACAGTGGATGAACAGGCTCATCGCGTTCGCATCCCGGGGCAACCACGTCTCACCGACGCACTATGTTCCCGAGAGCGATGCTGCGGCAAGGGTCACCGCATTGCTGAGTTCTCTAACTGTCACAAGTCTGCTCCGGCGGTTACACCAGTGGATCAATGAAGACTACCCAAGCCCTTGTAGCGACGATTGGCTACGTACCATCTGGGACTGGGTCTGCATGGTGTTGCTCGACTTCAAGACATGGCTGTCTGCTAAGATCATGCCATTGCTCCCTGGGTTGCCCTTCATTTCCTGTCAAAAGGGATATAAGGGCGTTTGGCAGGGGGACGGCGTGGTGTCCACTCGCTGTCCTTGCGGAGCAGTGATAACCGGTCATGTGAAGAACGGGTCCATGCGGCTTGCAGGACCACGTACATGTGCTAACATGTGGCACGGCACCTTCCCCATCAACGAGTACACCACCGGACCCAGCACACCTTGCCCATCACCCAACTACACTCGTGCACTGTGGCGCGTGGCTGCCAACAGCTACGTCGAAGTGCGACGGGTGGGAGACTTCCACTACATCACGGGGGCCACAGAAGATGAGCTCAAGTGTCCGTGCCAAGTGCCGGCTGCTGAGTTCTTTACTGAAGTGGATGGGGTGAGACTTCACCGTTACGCCCCTCCATGCAGGCCCCTGTTGAGGGATGAGATCACTTTCGTAGTAGGGCTGAATTCTTACGCGATAGGATCCCAACTCCCTTGTGAGCCCGAACCGGACGTCTCTGTGCTGACCTCGATGTTGAGAGACCCTTCCCATATCACCGCCGAGACGGCAGCGCGCCGCCTTGCACGCGGGTCCCCTCCATCAGAGGCAAGCTCATCCGCCAGTCAACTATCGGCTCCATCGTTGAAGGCCACTTGCCAAACGCATAGGCCTCATCCCGACGCGAGCTGGTGGACGCCAACTTGTGTTTGGCGACAAGAGATGGGCAGCAACATCACACGGGTAGAGTCCGAAACAAAGGTTGTGATTCTTGACTCATTCGAACCTCTGAGGGCCGAGACTGATGACACCGAGCTCTCGGTAGCAGCAGAGTGTTTCAAGAAACCTCCCAAGTATCCTCCAGCCCTCCCTATCTGGGCTAGGCCAGACTACAACCCTCCACTGTTGGATCGTTGGAAATCACCGGATTATGAACCACCAATTGTTCATGGGTGCGCCTTACCACCACAGGGTACTCCACCGGTGCCTCCCCCTCGGAGGAAAAGAACAATCCAGCTGGACGGCTCCAATGTGTCCGCGGCGCTAGCTGCGCTAGCGGAAAAATCATTCCCGGCCTCAAAACCGTTGGAAGCGGGTAGCTCATCCTCAGGGGTCGATACACAGTCCAGCACTACTTCCAAGGTGCCTCCCTCTTCGGAGAGAGAGTCCGACACAGAATCGTGCTCGTCCATGCCTCCTCTCGAGGGGGAGCCGGGCGATCCAGACTTGAGTTGCGACTCTTGGTCCACTGTTAGTGACAGCGAGGAGCAGAGCGTGGTCTGCTGCTCTATGTCGTATTCTTGGACCGACGCCCTGATAACACCATGTAGTGCTGAGGGAGAGAACTGCCCATCAGCCCACTCAGCAATCTTGGAGAGACATCACAACCTAATCTATTCAACGTCGTCTAGAATCGCTTCTCAACGTCAGAAGAAGGTCACCTTCGACAGGCTGCAGGTGCTCGACGACCATTACAAAACTGCATTAAAGGAGATAAAGGAGCGAGCGTCAAGGGTAAAGGCTCGCATGCTCACCATCGAGGAAGCGTGCGCGCTCGTCCCTCCTCACTCTGCTCGGTCAAAGTTCGGGTATAGTGCGAAGGACGCTCGCTCCCTGTCCAGCAAGGCCATTAACCAGATCCGCTCCGTCTGGGAGGACTTGCTGGAAGACACCACAACTCCAATTCCAACCACCATCATGGCGAAGAGCGAGGTTTTTTGTGTGGATCCTACTAAAGGAGGCCGTTTTTTGCTCGTCTCATTGTCTACCCTGACCTGGGGGTGCGCATCTGTGAGAACGTGCCCTATATGGCGTGATACAGAAGTGGGGAGTGGGGACGATGGGTCCTGCCTATGGATTCCAATACTCGCCTCAACAGCGGGTCGAACGTCTGCTGAAGATGTGGACCTCAAAGAAAGCCCAGTTGGGGTTCTCGTATGGTACCCGCTGCTTTGGCTCGACTGCCACTGGACAGGACATCAGGGTGGAAGAGGAGATATACCAATGCTGGAGCCTTGGACCGGAGGCCAGGAAAGTGATCTCCTCCCTCACGGAGCGGCTTTACTGCGGAGGCCCTATGTTCAACAGCAAGGGGGCCCAGTGTGGTTATCGCCGTTGCCGTGCCAGTGGAGTTCTGCCTACCAGCTTCGGCAACACGATCACTTGTTACATCAAGGCCACAGCGGCTGCAAAGGCCGCAAACCTCCGGAAGCCTGGCTTCTTGTTTGGGGAGGATGGATCCTGGTCGTATTACCTGAGGACCGAATGGGGTTCGAATGGAGATACGGGCAGTCCTGGGAGAGCCTTCACCGGAGGCTATGGACCAGGTATTTCTTGCTTCCACCCGGAGATGGCCCCCACAGGCCAACCCTACGACCTTTGGGCTCATTACATCTGGCTCCTCCAACGTCTCCGTGGCGCGGGACGATACGGGGAAGAGGTATTATTACCTCACTCGTGGTGCCACCACCCCCCTGGCCCGTGCTGCTTGGGAGACAGCTCGTCACACTCCAGTTACCTCCTGGCTGGGGAACATCATCATGTACGCGCCTACTATTTGGGTGCGCATGGTGGTGGTGGCACACTTTTTCTCCATACTCCAATCCCAGGAGATACTTGGTCGCCCCCTTGGCTTTGGAATGTACGGGGCCACTTACTCTGTCACTCCGCTGGATTTACCAGCAATCATTGGAAGACTCCATGGTCTACGCGCGTTTACGCTCCATATTTACTCTCCAGCAGAGCTCAATACGGTCGCGGGGACACTCAGGAAGCTTGTGCCCCCCCCTACGAGCTTGGAGACATCGGGCACGAGCAGTGCGCGCTATGCTTATCGCCCAGGGAGGGAAGGCCAGGATTTGTGGGCTTTATCACTTCAATTGGGCGGTACGCACCAAGACCACCCTCACTCCACTGCCAGCCGCTGGCCAGTTGGATTTATCCATCTGGTTTACGGTTGGTGTCGGCGGGAACGACATTCTCGCAGCGTGTCACGCGCCCGAACCCGCCATTTGCTGCTTTGCCTACTCCCTACTAACAGTAGGGGTAGGCATCTTTCTCTTGCCAGCTCGATGAGCTGGTAAGATAACACTCCATTTCTTTTTTGTTTTTTTTTTTTTTTTTTTT This is whole genome sequence of Hepatitis C Virus Genome and i want to calculate total …
  • Python Script to Calculate Total Number of genes in 3 ORF
    written by anasjamshed anasjamshed
    >GU294484.1 Hepatitis C virus isolate PK-1, complete genome ACCTGCCTCTTACGAGGCGACACTCCACCATGGATCACTCCCCTGTGAGGAACTACTGTCTTCACGCAGAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTGCAGCCTCCAGGACCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCAGGACGACCGGGTCCTTTCTTGGATAAACCCGCTCAATGCCTGGAGATTTGGGCGTGCCCCCGCAAGACTGCTAGCCGAGTAGTGTTGGGTCGCGAAAGGCCTTGTGGTACTGCCTGATAGGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCAACATGAGCACACTTCCTAAACCTCAAAGAAAAACCAAAAGAAAACCCATCCGTCGCCCACAGGACGTCAAGTTCCCGGGTGGCGGACAGATCGTTGGTGGAGTATACGTGTTGCCGCGCAGGGGCCCACGATTGGGTGTGCGCGCGACGCGTAAGGCTTCTGAACGGTCACAGCCTCGCGAACGACGACAGCCTATCCCCAAGGCGCGTCGGAGCGAAGGCCGGTCCTGGGCTCAGCCTGGGTACCCTTGGCCCCTCTATGGTAATGAGGGCTGCGGGTGGGCAGGGTGGCTCCTGTCCCCCCGCGGCTCCCGTCCATCTTGGGGCCCAAACGACCCCCGGCGAAGATCCCGCAACTTGGGTAAAGTCATCGATACCCTTACGTGCGGATTCGCCGACCTCATGGGGTACATCCCGCTCGTCGGCGCTCCCGTAGGAGGCGTCGCAAGAGCCCTCGCGCATGGCGTGAGGGCCCTTGAAGACGGGATAAATTTTGCGACAGGGAACTTGCCCGGTTGCTCCTTTTCTATCTTCCTTCTTGCTCTACTCTCTTGCTTAATTCATCCAGCAGCCAGTCTAGAGTGGCGGAATACGTCTGGTCTCTATGTCCTTACCAACGCCCGTTCCAACAGCAGTATAGTGTACGAGGCCGACGACGTTATCCTGCACACACCCGGCTGTATACCTTGTGTTCAGACCGGCAACACATCCAAGTGCTGGACCCCAATGACACCCACGGTGGCAGTTAAGTATGTCGGAGCAACCACCGCTTCGATACGCGGTCATGTGGACCTGTTAGTGGGCGCAGCCACGATGTGTTCTGCGCTCTACGTGGGTGATGTGTGCGGAGCCGTCTTCCTCGTGGGGCAAGCCTTCACGTTCAGGCCGCGACGCCATCAAACGGTCCAGACCTGCAACTGCTCGCTGTACCCAGGCCATCTCACAGGACATCGAATGGCTTGGGATATGATGATGAACTGGTCCCCTGCTGTTGGCATGGTGGTGGCGCACATCTTACGCCTACCCCAGACCCTGTTTGATATAATAGCCGGGGCCCATTGGGGCGTCTTGGCGGGTCTAGCCTACTATACCATGCAGGGCAACTGGGCCAAGGTCGCAATCATCATGGTTATGTTCTCAGGGGTCGATGCCGTTACGTACATCACTGGGGGCACTGCAGCTCGTGGGGGCCAAGGGCTGGCTAGCCTAATCGTCCGGGGGCCTGAGCAGCGCCTGGAGCTGATCAACACCCATGGCTCGTGGCACATCAACAGTACTGTCCTCCACTGCAATGAGTCCATAAACACAGGGTTTATAGCTGGGTTGTTTTATTATCATAAGTTCAACTTACTGGATGTCCCGAAGGCTCAGCAGCTGCAAGCCCATCACTTTCTTCAGGCAGGGGTGGGGCCCCTTGACAGATGCCAACATCCACCGGCCCTTCTGATGACAACCGTACTGCTGGCATACGCACCTAGACCTTGTGACAGCGTAAAGCAGCACGTGTCTCCGGTCCTGTGTATGCTTCCACACCATCGCCCAGTGGTGGTAGGCACTACTGATCCTAAGGGCGCTCCCACCTATAACTGGGGCGAGAATGAGACAGACGTGTTCCTGCTGAATCCCTGCGGCCTCCTAGTGGTCGGTGGTTTGGGTGGCACGTGGGAGGAACTCCACCGGGGTTTGTCAAGACGTGCGGAGGTTCCCCCTTGTGACATCTATGGGGGTGGGGGGGAGATCCACCAATGGTTCAGACCTCTTCTGCCCCACCGACTGCTTCAGGAAACATCCCGAGGCCACATACAGCCGGTGCGGCTCGGGGCCCTGGTTGACACCTCGATGCATGGTCGACTATCCATACCGGCTTTGGCATTACCCATGTACAGTCAATTTTACACTGTTCAAGGTGAGGATGTTTGTGGGTGGGTTTGGCATCGGTTTACCGCCGCTTGCAACTGGACTAGGGGGGAGCGCTGCGATATCGAGGATCGTGACCGCAGCGAGCAACATCCCCTGCTGCATTCAACAACTGAGCTTGCCATACTGCCTTGCTCTTTCACGCCCATGCCCGCATTGTCAACAGGGTTAATACACCTCCACCAAAACATCGTGGATGTCCAATACCTTTATGGCGTTGGATCTGGCATGGTGGGATGGGCGTTGAAATGGGAATTTGTCATCCTCGTTTTCCTCCTCCTAGCAGATGCACGCGTGTGCGTTGCCCTTTGGCTGATGCTGATGATATCACAAGCAGAAGCAGCCTGGAGAACTTGTCACGCTGAACGCCGTCTCTGCTGCCGGGACACATGGTATCGGCTGGTACCTGGTAGCATTTTGCGCGGCGTGGTACGTGCGGGGAAACTCGTCCCGCTGGTGACCTACAGCCTGACGGGTCTTTGGTCCCTAGCATTGCTCGTCCTTCTACTCCCCCAGCGGGCGTATGCTTGGTCGGGTGAAGACAGTGCCACCCTCGGCGCTGGGATCTTGGTCCTCTTCGGCTTCTTTACCCTGTCACCTTGGTATAAGCACTGGATCAGCCGCCTCATGTGGTGGAACCAGTACGCCATATGTAGGTGTGAGTCTGCTCTCCAAGTATGGGTCCCCCCCCTACTTGCCCGCGGGAGTAGGGACGGTGTTATCCTGCTAACAAGCCTGCTTTATCCATCATTAGTTTTTGACATCGCTAAGCTGCTGATAGCCGTAATAGGCCCATTATATCTAATACAGGCCGCCATCACTACTACCCCCTACTTTGTGCGTGCGCATGTTCTGGTCCGCCTTTGCATGTTCGTGCGCTCCGTGACGGGGGGAAAGTACTTCCAGATGGCCATACTGAGCGTCGGCAGATGGTTTAACACCTACCTATATGACCACCTTGCACCGATGCAACACTGGGCCGCAGCAGGCCTCAAAGACCTGGCAGTAGCCACTGAACCTGTAATATTCAGTCCCATGGAAATCAAGGTCATCACTTGGGGCGCGGACACGGCAGCTTGCGGAGATATCCTATGCGGGCTGCCCGTCTCTGCACGATTAGGCCGTGAGGTGTTGTTGGGACCTGCTGATGACTATCGGGAGATGGGCTGGCGTCTGTTGGCCCCGATTACAGCATACGCCCAGCAAACTAGGCGTCTTTTTGGGACTATTGTGACCAGCTTGACTGGCAGGGACAAGAACGTGGTGGCCGGCGAAGTGCAGGTGCTTTCTACGGCTACCCAGACCTTCCTAGGTACAACATTGGGAGGGGTTATGTGGACTGTTTACCATGGAGCAGGTTCGAGAACACTTGCGGGCGTCAAACATCCTGCGCTCCAAATGTACACAAATGTAGATCAGGACCTCGTTGGATGGCCAGCTCCTCCGGGGGCTAAGTCTCTTGAACCGTGCACCTGCGGGTCTGCGGACTTGTACTTGGTTACCCGCGAAGCTGATGTCATCCCTGCTAGACGCAGGGGGGACTCCACAGCGAGCTTGCTCAGTCCTAGGCCTCTCGCCTGTCTCAAAGGTTCCTCTGGAGGTCCTGTTATGTGCCCTTCGGGCCACGTAGCGGGGATCTTTAGGGCTGCTGTGTGCACCAGAGGTGTAGCAAAAGCCCTACAGTTCATACCAGTGGAAACCCTTAGCACACAGGCTAGGTCTCCATCCTTTTCTGACAATTCAACTCCTCCTGCTGTTCCACAGAGCTATCAAGTAGGGTACCTTCATGCCCCGACCGGCAGCGGTAAGAGCACAAAGGTCCCGGCCGCTTATGTAGCACAAGGATATAATGTTCTCGTGTTGAATCCATCAGTGGCGGCCACACTAGGCTTCGGCTCTTTCATGTCGCGAGCTTATGGGATCGACCCCAACATCCGCACCGGGAACGGCACGGTTACAACTGGTGCTAATCTGACCTATTCCACCTATGGTAAGTTTCTCGCGGACGGGGGTTGCTCGGGGGGAGCATATGATGTGATTATCTGTGATGAGTGTCATGCCCAAGACTCTACTAGCATACTGGGTATAGGCACGGTCCTAGATCAGGCTGAAACGGCTGGGGTGAGGCTGACGGTTTTAGCAACAGCAACTCCCCCAGGCAGCATCATTGGGCCCCATTCTAACCTCAAAGAAGTGGCCCTTGGTTCTGAGGGGGAGATCCCTTTCTTCGGCAAGGCCATACCGCTAGCCCTGCTAAGGGGGAAAGGCACCTTATTTTTTTCCATTCCAAGAAAAAATGTGATGAGATGGCATCCAAACTCAGAGGCATGGGGCTCAACGCTGAAGGAGTACTACAGGGGTCTTGATGTGTCCGTCATACCAACATCAGGAGACGTTGTAGTTTGCGCTACTGACGCCCTCATGACTGGATTCACCGGAGACTTCGACTCTGTCATAGATTGCAACGTGGCTGTTGAACAGTACGTTGATTTCAGCTTGGACCCCACCTTTTCCATTGAGACTCGCACTGCTCCCCAAGACGCGGTTTCCCGCAGTCAACGTCGTGGCCGTACGGGCCGAGGTAGACTCGGCACGTACCGATATGTCACCCCCGGTGAAAGACCGTCTGGGATGTTTGACTCGGCTGTTCTCTGTGAGTGCTATGACGCGGGCTGCTCGTGGTACGACTTGCAGCCCGCCGAGACCACAGTCAGACTAAGAGCTTACTTGTCCACGCCGGGGTTACCTGTCTGCCAAGACCACTTGGAATTTTGGGAGAGCGTCTTCACTGGACTAACTCACATAGATGCCCACTTTCTATCACAGACCAAGCAGCAGGGACTCAACTTCCCATACCTAGCTGCCTACCAAGCCACTGTGTGCGCTCGCGCGCAAGCTCCTCCCCCAAGTTGGGACGAGACATGGAAGTGTCTCGTGCGGCTTAAGCCAACACTACATGGACCTACACCCCTTCGATATCGGCCGGGGCCTGTCCAAAATGAAACCTGCTTGACACACCCCATCACAAAATACCTCATGGCATGCATGTCAGCCGATCTGGAAGTAACCACCAGCACCTGGAGCACCTGGGTGTTGCTCGGAGGGGTCCTCGCGGCCCTGGCAGCCTACTGCTTGTCGGTCGGCTGCGTAGTCATTGTGGGCCACATTGAGCTGGGGGGCAAGCCGGCGCTCGTTCCTGACAAAGAAGTGTTGTATCAACAATACGATGAGATGGAGGAGTGCTCACAAGCTGCCCCATATATCGAACAAGCTCAAGTAATAGCCCACCAGTTCAAGGAAAAAGTCCTTGGATTGCTACAGCGAGCTACCCAACAACAAGCTGTCATTGAGCCCATAGTAGTTACCAACTGGCAAAAGCTTGAGGCCTTCTGGCACAAGCACATGTGGAACTTTGTGAGTGGGATTCAGTACCTAGCAGGTCTCTCCACTTTGCCCGGCAACCCCGCTGTGGCGTCTCTTATGGCGTTCGCTGCTTCAGTCACCAGTCCCCTGACGACCAATCAAACTATGTTTTTTAACATACTCGGGGGATGGGTTGCTACTCATTTGGCAGGGCCCCAGAGCTCTTCCGCATTCGTGGTAAGCGGCTTGGCCGGCGCTGCCATAGGGGGCATAGGCCTGGGCAGGGTCTTACTTGACATCCTGGCAGGATACGGAGCTGGTGTCTCAGGCGCCTTGGTGGCTTTCAAAATCATGGGGGGGGAACTCCCCAATGCCGAGGACGTGGTCAATCTGTTGCCCGCCATACTATCTCCGGGTGCTCTCGTCGTCGGGGTGATATGCGCTGCCCTACTACGTCGGCACGTGGGACCTGGGGAGGGAGCGGTACAGTGGATGAACAGGCTCATCGCGTTCGCATCCCGGGGCAACCACGTCTCACCGACGCACTATGTTCCCGAGAGCGATGCTGCGGCAAGGGTCACCGCATTGCTGAGTTCTCTAACTGTCACAAGTCTGCTCCGGCGGTTACACCAGTGGATCAATGAAGACTACCCAAGCCCTTGTAGCGACGATTGGCTACGTACCATCTGGGACTGGGTCTGCATGGTGTTGCTCGACTTCAAGACATGGCTGTCTGCTAAGATCATGCCATTGCTCCCTGGGTTGCCCTTCATTTCCTGTCAAAAGGGATATAAGGGCGTTTGGCAGGGGGACGGCGTGGTGTCCACTCGCTGTCCTTGCGGAGCAGTGATAACCGGTCATGTGAAGAACGGGTCCATGCGGCTTGCAGGACCACGTACATGTGCTAACATGTGGCACGGCACCTTCCCCATCAACGAGTACACCACCGGACCCAGCACACCTTGCCCATCACCCAACTACACTCGTGCACTGTGGCGCGTGGCTGCCAACAGCTACGTCGAAGTGCGACGGGTGGGAGACTTCCACTACATCACGGGGGCCACAGAAGATGAGCTCAAGTGTCCGTGCCAAGTGCCGGCTGCTGAGTTCTTTACTGAAGTGGATGGGGTGAGACTTCACCGTTACGCCCCTCCATGCAGGCCCCTGTTGAGGGATGAGATCACTTTCGTAGTAGGGCTGAATTCTTACGCGATAGGATCCCAACTCCCTTGTGAGCCCGAACCGGACGTCTCTGTGCTGACCTCGATGTTGAGAGACCCTTCCCATATCACCGCCGAGACGGCAGCGCGCCGCCTTGCACGCGGGTCCCCTCCATCAGAGGCAAGCTCATCCGCCAGTCAACTATCGGCTCCATCGTTGAAGGCCACTTGCCAAACGCATAGGCCTCATCCCGACGCGAGCTGGTGGACGCCAACTTGTGTTTGGCGACAAGAGATGGGCAGCAACATCACACGGGTAGAGTCCGAAACAAAGGTTGTGATTCTTGACTCATTCGAACCTCTGAGGGCCGAGACTGATGACACCGAGCTCTCGGTAGCAGCAGAGTGTTTCAAGAAACCTCCCAAGTATCCTCCAGCCCTCCCTATCTGGGCTAGGCCAGACTACAACCCTCCACTGTTGGATCGTTGGAAATCACCGGATTATGAACCACCAATTGTTCATGGGTGCGCCTTACCACCACAGGGTACTCCACCGGTGCCTCCCCCTCGGAGGAAAAGAACAATCCAGCTGGACGGCTCCAATGTGTCCGCGGCGCTAGCTGCGCTAGCGGAAAAATCATTCCCGGCCTCAAAACCGTTGGAAGCGGGTAGCTCATCCTCAGGGGTCGATACACAGTCCAGCACTACTTCCAAGGTGCCTCCCTCTTCGGAGAGAGAGTCCGACACAGAATCGTGCTCGTCCATGCCTCCTCTCGAGGGGGAGCCGGGCGATCCAGACTTGAGTTGCGACTCTTGGTCCACTGTTAGTGACAGCGAGGAGCAGAGCGTGGTCTGCTGCTCTATGTCGTATTCTTGGACCGACGCCCTGATAACACCATGTAGTGCTGAGGGAGAGAACTGCCCATCAGCCCACTCAGCAATCTTGGAGAGACATCACAACCTAATCTATTCAACGTCGTCTAGAATCGCTTCTCAACGTCAGAAGAAGGTCACCTTCGACAGGCTGCAGGTGCTCGACGACCATTACAAAACTGCATTAAAGGAGATAAAGGAGCGAGCGTCAAGGGTAAAGGCTCGCATGCTCACCATCGAGGAAGCGTGCGCGCTCGTCCCTCCTCACTCTGCTCGGTCAAAGTTCGGGTATAGTGCGAAGGACGCTCGCTCCCTGTCCAGCAAGGCCATTAACCAGATCCGCTCCGTCTGGGAGGACTTGCTGGAAGACACCACAACTCCAATTCCAACCACCATCATGGCGAAGAGCGAGGTTTTTTGTGTGGATCCTACTAAAGGAGGCCGTTTTTTGCTCGTCTCATTGTCTACCCTGACCTGGGGGTGCGCATCTGTGAGAACGTGCCCTATATGGCGTGATACAGAAGTGGGGAGTGGGGACGATGGGTCCTGCCTATGGATTCCAATACTCGCCTCAACAGCGGGTCGAACGTCTGCTGAAGATGTGGACCTCAAAGAAAGCCCAGTTGGGGTTCTCGTATGGTACCCGCTGCTTTGGCTCGACTGCCACTGGACAGGACATCAGGGTGGAAGAGGAGATATACCAATGCTGGAGCCTTGGACCGGAGGCCAGGAAAGTGATCTCCTCCCTCACGGAGCGGCTTTACTGCGGAGGCCCTATGTTCAACAGCAAGGGGGCCCAGTGTGGTTATCGCCGTTGCCGTGCCAGTGGAGTTCTGCCTACCAGCTTCGGCAACACGATCACTTGTTACATCAAGGCCACAGCGGCTGCAAAGGCCGCAAACCTCCGGAAGCCTGGCTTCTTGTTTGGGGAGGATGGATCCTGGTCGTATTACCTGAGGACCGAATGGGGTTCGAATGGAGATACGGGCAGTCCTGGGAGAGCCTTCACCGGAGGCTATGGACCAGGTATTTCTTGCTTCCACCCGGAGATGGCCCCCACAGGCCAACCCTACGACCTTTGGGCTCATTACATCTGGCTCCTCCAACGTCTCCGTGGCGCGGGACGATACGGGGAAGAGGTATTATTACCTCACTCGTGGTGCCACCACCCCCCTGGCCCGTGCTGCTTGGGAGACAGCTCGTCACACTCCAGTTACCTCCTGGCTGGGGAACATCATCATGTACGCGCCTACTATTTGGGTGCGCATGGTGGTGGTGGCACACTTTTTCTCCATACTCCAATCCCAGGAGATACTTGGTCGCCCCCTTGGCTTTGGAATGTACGGGGCCACTTACTCTGTCACTCCGCTGGATTTACCAGCAATCATTGGAAGACTCCATGGTCTACGCGCGTTTACGCTCCATATTTACTCTCCAGCAGAGCTCAATACGGTCGCGGGGACACTCAGGAAGCTTGTGCCCCCCCCTACGAGCTTGGAGACATCGGGCACGAGCAGTGCGCGCTATGCTTATCGCCCAGGGAGGGAAGGCCAGGATTTGTGGGCTTTATCACTTCAATTGGGCGGTACGCACCAAGACCACCCTCACTCCACTGCCAGCCGCTGGCCAGTTGGATTTATCCATCTGGTTTACGGTTGGTGTCGGCGGGAACGACATTCTCGCAGCGTGTCACGCGCCCGAACCCGCCATTTGCTGCTTTGCCTACTCCCTACTAACAGTAGGGGTAGGCATCTTTCTCTTGCCAGCTCGATGAGCTGGTAAGATAACACTCCATTTCTTTTTTGTTTTTTTTTTTTTTTTTTTT I want to calculate total no of genes present in ORF of this Sequence through Python …