conversion binary to ATGC
CloneID Sequence CloneID P1 P2 1 2 3 4
11061 TCGCTGTACACTGTTGACGTCGCC 11061 1 1 1 1 1 1
11294 AAAGGTTCTATCTCGCTGAAACCCAG 11294 0 1 1 1 1 1
22912 ACCATCGCTGCACCACCTTGACCT 22912 1 - 1 1 1 1
11324 AGCAGCGTCGACTGCCGAGATCGG 11324 1 1 1 1 1 1
10918 GACGTGGCCGAGATCGGAAGAGC 10918 - 1 1 1 1 1
22617 AGCAGCGGTGTGTCACCATGGGGTG 22617 0 1 1 1 - 1
30239 TACCTCCGAGATCGGAAGAGCGGTTCG 30239 - 1 1 1 1 1
18650 GACTTGCCTGCGCGCCGCC 18650 1 1 1 1 1 1
10995 TGAAATGCCGTGCATGATTAA 10995 1 1 1 - 1 1
11261 TAGGTTACCTTCCGAGATCGGAAG 11261 1 1 1 1 1 1
This is my DArT example data (it's already in biallelic format). How Should i convert into AT, GC format for each binary digit? Kindly help me. Thanks in advance.
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bulbul •
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Conversion of binary to ATGC
written by bulbul •
Please use the formatting bar (especially the
codeoption) to present your post better. I've done it for you this time.Thank you!
Hi, Can you please clearly mention which binary digit data belongs to which nucleotide?
"0" = Reference allele homozygote, "1"= SNP allele homozygote, "-" = missing. But I do not know to to convert the above example data into AT GC AA CC like. kindly suggest me. thank you.
This format is the output from which program? Aren't there any accompanying input / output files? How did you obtain this output?
With the information you provided, it is impossible to help in any way.
I have done it for you this time. However, please follow what genomax told in his comment from next time onwards