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Software to detect snps and indels on pacbio data

Dear colleagues,

I want to detect SNPs and Indels on pacbio data (I did the subreads mapping on the reference sequence by minimap). Do you have an idea about the tools that identify variations on pacbio data ???

snp indels pacbio

No information about my question in this post

The link on the bottom contains a link to the GitHub of PacificBiosciences and its toolkit GenomicConsensus, which apparently contains a variant calling module. Please do put in a bit of effort reading the linked posts before replying to a user in such an unmotivated fashion. This might make you appear lazy and does not motivate others to help you any further.

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