More posts like this
-
cluster - visual studio code
written by beginner123 •Hi everyone, Does anyone know how to move visual studio code to a cluster? Thanks in advance! Beginner
-
RNAseq quality control-rRNA rate
written by Ahmed.waraky •Hi I'm trying to calculate ratio of rRNA from my BAM file after alignment. Anyone know possible way beside RNA-SeQC as so far doesn't seem …
-
R reshape data
written by Cindy •Hi, everyone, I am trying to use haplo stats to predict haplotypes using phased genotype data. I need generate a genotype matrix. my data is …
-
How to analyse number of breakpoints -TCGA data
written by berry •Hi, I have TCGA segment files and I want to analyse the number of breakpoints. Does anyone know how to calculate it? Thanks!
-
Tools to calculate directionality index
written by h.long •Hi, I am looking for a software tool which will allow me to use the directionality index to call TADs as defined by [Dixon et …
-
Frequently Interacting Regions
written by BenHu •Does anyone know how to extract results from hicFindEnrichedContacts.py? As I want to know the regions and scores of FIREs. Thanks in advance!
-
how to detect RNA editing
written by BenDoes anyone know how to analyze the changes to RNA editing from RNA-seq data? And would like to explian the algorithm of RNA editing? Thanks …
-
Use Plink to calculate OR for homozygous ?
written by lmobuchon •Hi everyone, I would like to calculate OR for heterozygous and homozygous for the risk allele of the SNP I identified by GWAS. I only …
-
Calculate Number of Reads per class code (cufflinks)
written by guisa.santos •Dear all, Does anybody know how to calculate the total number of reads "used" by each transcript class code (=, c, j, i, etc) from …
-
How To Calculate The Number Of Potential Synonymous And Nonsynonynous Sites
written by bingyu19821270 •<p>Hi everyone,</p> <p>Does anyone know how to calculate the number of synonymous sites for a certain sequence? I know the principles, but I don't know …