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Docking in small sized ribosomal protein

Hi, i narrowed down a list of common target proteins after doing the whole genome sequencing of 9 pathogens. Most of them seemed to be ribosomal proteins. Now I'm going to perform docking , however the protein structure is too small and there are no ligand (lead molecule) binding sites available (or not shown) . What shall i do next? Shall i study the protein-protein interaction and target it's interacting protein instead?

protein docking ligand cadd drug discovery

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