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Download sequences from Bioproject

Hello everyone,

I am trying to download the mRNA sequences from the following link:

https://www.ncbi.nlm.nih.gov/bioproject/81581

However, I tried to search information about how to do it but it was useless. Could somebody give my some information about how do this?

Thank you to everyone.

JC

rna-seq
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updated by Bastien Hervé Bastien Hervé • written by JC • JC

2 answers

You can use NCBI UNIX utils to download data in the fasta format.

esearch -db bioproject -query 81581 |elink -target nuccore|efetch -format fasta
• 1 views • link
written by Sej Modha Sej Modha

Under "Projet Data", in the table click on 1 on the line "SRA Experiments".

On the next page in the table "Runs" click on SRR400672.

In this new page, you can have a look at all your reads, in the Reads tab

Instructions to download your reads are under the Download tab

• 1 views • link
written by Bastien Hervé Bastien Hervé

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