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Interpretation of assoc.logistic in plink

Hello,

I have just conducted a logistic conditional analysis by plink. The file shows two lines for a SNP. How to interpret this?

Code:

--allow-no-sex
--bfile  
--condition rs3456
--dominant
--logistic
--out ***_rs3456

CHR SNP BP A1 TEST NMISS OR STAT P
1       rs1234  12345 C DOM 2000 1.03 0.1973 0.8436
1       rs1234  12345 C rs3456 2000 0.3986  -5.396 6e-08

As I wanted to do this analysis by --dominant, the p-value for this analysis should be 0.8436 as above?

Also, if allelic/dom/rec models are all "NA", is it OK just to ignore those SNPs?

Thank you in advance!

snp genome plink
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updated by zx8754 zx8754 • written by khn khn

Please edit the post and add logical tags. If this is a question about plink why did you use R tag?

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written by GenoMax GenoMax

Combined my questions above

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written by khn khn

Do not add answers unless you're answering the top level question. This content should be added to the top level post by editing it. See: How do I edit my post?

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written by Ram Ram

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