Dear Community, The goal of my study is analyze Human RNA-seq and to take the gene count for RNA-seq and then apply the DESq2. I …

Hello, Is there a GTF file for mouse that includes pIRNAs for annotation of small RNAseq data. I am using StringTie for annotation of small …

Hi all, I have been trying to get information on converting NCBI GeneID to Glyma ID for soybean gene annotation. However it seems like such …

Hi, I am working on a small paper to characterize lncrna in in vitro differentiated neural cells. I started with using gencode annotation file for …

Dear all, I would like to replicate an analysis from the paper "[Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing"][1]. In more detail, …

Dear all, I am working on whole-genome-bisulfite data and would like to detect differentillay methylated regions. When having predefine conditions for each sample (i.e. clinical …

Dear all, I am dealing with Whole-Genome-Bisulfite data and currently I am interested in DMRs. I have six tumor types and each tumor type has …

Dear all, I am working with the gene annotation hg19 (ensembl release 74). I would like to get the TSS for each gene. For the …

Dear all, I would like to ask you for two suggestions: 1. If got an incredible amount of miRNA-Seq data. Can anybody of you recommend …

Dear fellow researchers, I am struggling with the following problem - I am conducting a study on pediatric brain tumors, but to make my analysis …