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Seed Region Annotation Database for Human miRNA
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Entering edit mode
2.5 years ago
Shicheng Guo ♦ 7.5k
@Shicheng Guo19400

Hi All,

Is there any database or website provided seed region annotation for 1000+ human miNRA?

Thank Genomax's Help! Here is the link:

http://www.targetscan.org/vert_72/vert_72_data_download/miR_Family_Info.txt.zip

http://www.targetscan.org/cgi-bin/targetscan/data_download.vert72.cgi


miRfamily Seed+m8 Species ID    MiRBaseID   Maturesequence  FamilyConservation Accession
let-7/98    GAGGUAG 8364    xtr-let-7a  UGAGGUAGUAGGUUGUAUAGUU  2   MIMAT0003667
let-7/98    GAGGUAG 8364    xtr-let-7b  UGAGGUAGUAGUUUGUGUAGUU  2   MIMAT0003550
let-7/98    GAGGUAG 8364    xtr-let-7c  UGAGGUAGUAGGUUGUAUGGUU  2   MIMAT0003644
let-7/98    GAGGUAG 8364    xtr-let-7e  UGAGGUAGUAGGUUGUUUAGUU  2   MIMAT0003666
let-7/98    GAGGUAG 8364    xtr-let-7f  UGAGGUAGUAGAUUGUAUAGUU  2   MIMAT0003645
let-7/98    GAGGUAG 8364    xtr-let-7g  UGAGGUAGUUGUUUGUACAGU   2   MIMAT0003646
miRNA seed • 288 views
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2.5 years ago
genomax 68k
@genomax

My answer here: seed sequences of human miRNA

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