Thank you very much!!
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Hello,
I have a VCF file and a BED file in the form of <chr> <start> <end>. How do I filter my VCF file to include SNPs that are within the coordinates of the BED file?
Thank you!!
BEDTools has the ability to process VCF (and BED too of course), so you can use "bedtools intersect" with the VCF and BED file as input
Hope that helps
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