Dear Biostar Users,
I executed ViralFusionSeq using Next Generation RNA-seq for finding Virus-Human Fusion.
But It's interpretation of results were really hard. :(
After Running, I acquired 3 files.
[Run_Id].Csm.out [Run_Id].RPm.out [Run_Id].targeted.assembly.sensitive.contigs
If there is output in targeted.assembly.sensitive.contigs, can I think there is fusion in my sample?
This is paper of viral fusion seq
ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution, Jing-Woei Li et al.
And can you recommend other virus-human detection tools?