Question: AUGUSTUS protein profile run error
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I am trying to use AUGUSTUS 3.2.3 in the protein profile mode. However, I see an error that reads:

 augustus: ERROR
    Invalid block no. in SubstateModel::blockNoOfB

Is there a user here who knows which version of AUGUSTUS does not throw this error (I vaguely remember ver 2.6 worked OK for me in --ppx mode)

and/or

how to modify any upstream steps to avoid this error (during prepareAlign or msa2prfl while making the protein profile, or the AUGUSTUS syntax per se?) Thanks!

ADD COMMENTlinkeditmoderate 18 months ago Anand Rao • 210

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