How to decode patient barcode inTCGA database ?
1
0
Entering edit mode
5.7 years ago
Björn ▴ 110

Following the command below

query <- GDCquery(project = "TCGA-PRAD", 
              data.category = "Clinical",file.type = "xml")
GDCdownload(query)
clinical.radiation <- GDCprepare_clinic(query, directory = "GDCdata", clinical.info = "patient")

I downloaded the data in CSV file and found there are some patient ID with multiple entries . As an example

TCGA-HC-8265-01B-04R-2303-13 
TCGA-HC-8265-01A-11R-2262-13

My queries:

what does 04R and 11R means ? So as 2303 vs 2262 ?

Is there any manual or weblink to find the details on barID.

Thanks

tcga patient GDC R • 1.4k views
ADD COMMENT
1
Entering edit mode
5.7 years ago
GenoMax 141k

See if this recent thread helps: TCGA (legacy) barcodes for identifying tumour/normal samples

ADD COMMENT

Login before adding your answer.

Traffic: 3115 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6