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convert .bed (uscs) format to .bed (plink) format

Hello. Is it possible to convert a .ucsc .bed format to a plink .bed format without routing it through a .vcf?

.bed formats
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updated by Devon Ryan Devon Ryan • written by genomics Newbie • genomics Newbie

If you would have spend some time to read documentation of those file formats you would easily have figured out that these are entirely different.

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written by WouterDeCoster WouterDeCoster

Hello genomics Newbie!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

PS: Please do not open multiple questions on the same topic.

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written by Ram Ram

1 answer

No and trying to do so via VCF is likely to end up in nonsense.

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written by Devon Ryan Devon Ryan

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