Alternatives to WGCNA?

Question

[as.mac]

What are alternative R packages to obtain gene co-expression modules, similar to WGCNA? I want to verify that the modules obtained by WGCNA are reproducible using an independent method.

Alternative, do you have any suggestions to test the reproducibility of the modules?

Thanks

Answer 1

[Kevin Blighe]

Please take a look at my tutorial: Network plot from expression data in R using igraph

The final 'communities' that I identify are akin to the modules in WGCNA.

Kevin