Alternatives to WGCNA?

What are alternative R packages to obtain gene co-expression modules, similar to WGCNA? I want to verify that the modules obtained by WGCNA are reproducible using an independent method.

Alternative, do you have any suggestions to test the reproducibility of the modules?

Thanks

r gene co-expression expression modules

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updated 8.1 years ago by Kevin Blighe

• written 8.1 years ago by as.mac •

1 answer

Please take a look at my tutorial: Network plot from expression data in R using igraph

The final 'communities' that I identify are akin to the modules in WGCNA.

Kevin

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written 8.1 years ago by Kevin Blighe

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