dynamic tree cut
Hi,
I am clustering log2fold changes of genes. I am confused about the output of the dynamictreecut package. If I run the following:
dynamic_hybrid = cutreeHybrid(clust_fc, as.matrix(dist_fc), deepSplit=1)
clusters = dynamic_hybrid$labels
how do I know which genes are assigned to which clusters? Will the ordering of cluster assignment to genes be rownames of the input clust_fc?
In other words, what is the proper way of extracting the cluster assignment for each gene in the clustering?
Thank you very much.
teabonng
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Jean-Karim Heriche
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druggable •
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druggable •
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As per the docs for cutreeHybrid(), the function returns a list in which one element is called labels and contains the cluster assignments, i.e. a cluster indicator vector C such that C[i] = k means item i belongs to cluster k.
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