Looking for a way to find the locations where a VCF and a Clinvar Track Both Have Entries. And also being able to filter these entries based on the nature of either entry. Perhaps something like finding where the VCF has a SNP/Indel at the same location the ClinVar file has an entry whose significance is pathogenic, etc.,
Does anyone know of a way to see this? I can easily jump from one entry to the next in either the ClinVar or VCF Track, but I don't see something that lets you filter/jump to track intersections meeting specific criteria. Just looking to understand the nature of the area surrounding these intersections to see what alternative mappings there might be.
I reviewed IGV's scripting options, but it doesn't seem to offer this, nearly as I can tell.
Any thoughts would be much appreciated.
Thanks very much!