Hello, I currently have bgen files split by chromosome and would like to combine them into one file so I could run QC in plink. …

Hello- I have a tree in R: library(ape) tree = read.tree(file) and I would like to associate each tip label in tree$tip.label with the length …

Hello everyone! I need to get Fst values for multiple populations combined pairwisely. <br/><br/>__*For example:*__ ---------- **Populations:** Pop1 Pop2 Pop3 Pop4 Pop5 **Combinations:** Pop1 with …

Dear all, I would like to perform a nj tree with 1000 bootstrap on my snp data. I have around 5K snps and I am …

I have got an IBS (identity by state) distance matrix (in .mibs format with its corresponding IDs file) computed by PLINK from genomic SNPs of …

Hi everyone, I'm trying to use vcf files from the 1000 Human Genomes Project to establish distance between populations, most recent common ancestor and a …

I am using a R package called adegenet to plot the nj tree from plink files. In my plink file (input.raw) FID and IID are …

<p>Hello,</p> <p>I would like to know the association between the snps and the clinical variables available. For this, I have to do association for all …

Hi, I am working with the R package "adegenet". I have 2 genlight objects (2 populations of different size), and I need to make it …

<p>Hi everyone i finished listeria genome assembly with Spades, after that i used ABACAS for scaffolding and ordering of the contig but i have few …