how to combine ChIP-seq and RNA-seq data
Hi all, How i can combine ChIP-seq and RNA-seq data to figure out the candidate genes? Do you have any suggestion. Thanks,
chip-seq
rna-seq
sequence
• 2,014 views
•
link
written
by
mikysyc2016
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Nomalization - TCGA, RNA-seq and Microarray
written by jain72744 •Hi, I have three different datasets- one is TCGA Data for liver cancer, then is RNA-seq data of liver cancer and then microarray data. Since …
-
correlation between SCRNA-Seq and bulk RNAseq
written by kanwarjagI have selected 1800 cells and 1600 genes from scRNAseq (Single cell RNASeq). I have a public data set of bulk RNAseq of 5 replicates. …
-
What is the difference between "findMotifsGenome.pl" and "findMotifs.pl" in homer motif analysis?
written by mikysyc2016Hi all, Did you try both of them to see what is the difference between these two to do motif analysis with ChIP-seq results? Homer …
-
total reads for ChIP-seq and RNA-seq
written by mikysyc2016Hi all, When you know the counts number for each gene(RNA-seq) or tags number for each peaks(ChIP-seq), you will need total reads for TPM or …
-
A question about replicates of ChIP-sep results
written by mikysyc2016Hi all. I have a question with replicates of ChIP-sep results. I have a little big peak numbers difference with ChIP-seq after I do peak …
-
can not upload bedgraph and bigwig data into WashU browser
written by mikysyc2016Hi all, I want to use Wash U browser to make figure for my ChIP-seq data. But I can not upload my bedgraph and bigwig …
-
the track part of UCSC table browser
written by mikysyc2016Hi all, I prepare to download annotation file(gtf) from ucsc to do rna-seq analysis, but i can not download directly. So i preapare to download …
-
download mm9 mouse genome fasta file
written by mikysyc2016Hi all, I start to analysis the ChIP-seq data, but first i need mm9 mouse genome fasta file. How you get it from Website? If …
-
metagenomic profiling and population analysis
written by mkh •Hi all I would like to do bacterial population metagenomic profiling and population analysis on the RNA-seq data. I have no idea how to this …
-
ChIP-seq vs. RNA-seq
written by kk1990 •Hi! I have two sets of data in fastq format, say A and B. How can I tell which one comes from ChIP-seq and which …
Please read this on how to ask a scientific question, and then consider to rephrase your question, providing more details on which data you have and what question you want to answer.