I have cDNA variant of LRG (Refseq) sequences (e.g. NM_020469.2:c.467C>T) want to convert to hg19 genomic co-ordinate. For the same I am using "NCBI Genome Remapping Service- clinical remap " online service.
Parameter selected: I have data on : LRG I want to map to:hg19
NM_020469.2:c.467C>T NM_020469.2:c.318C>T NM_020469.2:c.220C>T NM_020469.2:c.189C>T NM_020469.2:c.188G>A NM_020469.2:c.106G>T
Problem is in vcf output when I go to UCSC hg19 same genome position it shows me different basepair(136136770=> A [but the output given by clinical remap is G for same postion]) than clinical remap output .
Can anyone please tell me the reason and help to convert my cDNA LRG variant to hg19 genomic coordinate.
Thank you In advance,