This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Tool for grouping sequences into clusters with homology within each one above certain threshold?

Is there a tool/script/algorithm for grouping sequences into bins so that within each group homology for any two sequences is above (or equal to) a certain threshold value (unless there's only one sequence in a bin)? Some sequences may end up being chimeric, some bins may end up containing a single sequence but only if they don't fit into all other bins.

alignment sequence clustering ngs
• 1,332 views • link
updated by pbpanigrahi pbpanigrahi • written by prishly • prishly

1 answer

Try CD-HIT

• 1 views • link
written by pbpanigrahi pbpanigrahi

Log in to answer this question.

More posts like this