How to select the reference genome
Hello,
I am looking for the mm10 reference genome. I visited the ucsc genome browser but I was not able to choose the reference genome file because there were a lot of files in FTP web folders. So my question is which file is the right gtf file for using galaxy and genomespace.
Thank you for your help. Best,
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Hello dhpark!
We believe that this post does not fit the main topic of this site.
Please search the site before posting: Where can I download the NCBI reference genome for mouse GRCm38
For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.
If you disagree please tell us why in a reply below, we'll be happy to talk about it.
Cheers!
Hello,
I am sorry for my mistake and I apologize for it. And I also thank you for your help.
Best,
No problem, you don't need to apologize. It's always better to search for existing solutions - saves you time, chances are someone has faced the same (or highly similar) problem before.
You may want to get the files you need from GENCODE.