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CHIMERA Protein Structure Positioning Question

Say I have a protein structure consisting of multiple alpha-helices. How do I select one alpha-helix and position the entire protein so that this one alpha helix is perfectly vertical, or horizontal?

protein structure chimera

1 answer

To my knowledge this probably isn't really possible, though you may have more luck asking over on the chimera users forum/mailing list. If it is, I suspect it's going to be difficult.

The only possible approach that springs to mind might be to define a centroid axis through the helix, but I still don't know if its possible to position the axis relative to the x,y,z planes.

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