Convert large protein fasta files to phylip format
I have run a multiple sequence alignment on a number of concatenated proteins (my input file sizes range from 5 Mb to 100 Mb).
But the server from EBI for instance (https://www.ebi.ac.uk/Tools/sfc/emboss_seqret/) limits input size to 2 Mb. Is there a command line tool I can use or a webserver without file limitation? Or can I create somehow phylip format directly with a multiple sequence aligner?
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