How to Ranking SNPs

I have SNPs data sets in PLINK format. I wanted to choose top 1000 only (based on p-value or some other order). I wonder, can i do this in PLINK? Or any other programme can do this SNP ranking? Any suggestion please?

plink snp r

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written 8.2 years ago by bha

Prune it based on LD, then run association, get top 1000 SNPs, then subset.

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written 8.2 years ago by zx8754

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