How to assign PAM50 subtypes to RNA seq data?
Hi, I have RNA-seq data on mouse mammary tumors and I want to see which PAM50 subtype they cluster with. However, I am not really sure how I can do this. Would I use FPKM and just cluster with the 50-gene signature?
thanks
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james.hawley •
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bionerd •
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bionerd •
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Take a look at the molecular.subtyping in the genefu Bioconductor package
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