How to analyse mtDNA insertion from NGS data?
Hello, emphasized textI need to analyse mtDNA sequencing data(sequence after multi-PCR which means no nuclear reads). I google and found mtDNA server, however this pipeline analyse indel only deletion not include insertion. Can anyone tell me how to analyse insertion? Or just introduce some tools. Thanks
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Oxford Nanopore Single-Molecule Amplicon-Seq Phasing
written by KoppesEA •
-
On the conventions for annotating the position of insertion and deletion variants
written by kynnjo •
-
Question: Where can I download ALU, SVA and LINE1 Elements in fasta format?
written by ncxhit •
-
GATK's NuMT detection algorithm?
written by a.j.wilson0000 •
-
Clipping primer after alignment
written by finswimmer
-
Some questions about call variants for mtDNA using GATK HaplotypeCaller
written by MatthewP
-
How to apply GATK on mtDNA sequencing data?
written by MatthewP
-
Some questions about write human mitochondrial variants into VCF file
written by MatthewP
-
How to prepare NGS data before running further analysis
written by nusrat.bot •
-
Removing duplicates from 16S RNA data
written by Bioinfguy •
