This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Visualizing MEME results togeather with a Phylogenetic Tree

Hi,

Are there any programs/ tools available in order to achieve the above task? (Preferably a GUI solution than command line)

Thank you in advance,

Venura

meme phylogeny domain protein motif
• 3,140 views • link
updated by letunic • letunic • written by venuraherath • venuraherath

2 answers

iTOL now supports MEME results as a dataset type. Check https://itol.embl.de/help.cgi#meme for details. You can simply drag-drop a MEME XML results file onto an iTOL tree, where the leaf IDs match the sequence IDs from the MEME file.

• 0 views • link
written by letunic • letunic

The best I can come up with would be iTOL though it may not well meet your requirements.

• 1 views • link
written by Sishuo Wang Sishuo Wang

Hi Shishuo,

Thank you for the reply. I contacted Ivica (creator) of iTOL as well and requesting him to add that feature i.e. direct input MEME output. He told me if there are many requests he might consider if not "no". Thanks, Venura

• 1 views • link
written by venuraherath • venuraherath

Hi venuraherath, PhyD3 is a newly released tool that is somewhat similar to iTOL, maybe they can help you with it?

• 1 views • link
written by Sishuo Wang Sishuo Wang

Log in to answer this question.

More posts like this