IGV: how is "Quality weight allele fraction" calculated?
0
2
Entering edit mode
6.0 years ago
omer.k ▴ 110

I'm inspecting raw NGS reads from human using IGV. The allele frequency threshold is kept at the default 0.2.

Yet this is apparently "Quality weight allele fraction" (IGV Preferences) and not regular fraction (e.g. A/[A+C+G+T] ).

Where can I find the formula for this calculation?

Thanks.

IGV SNV Varint calling • 1.4k views
ADD COMMENT

Login before adding your answer.

Traffic: 2534 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6