Biostar Beta. Not for public use.
IGV: how is "Quality weight allele fraction" calculated?
Entering edit mode
20 months ago
omer.k • 20

I'm inspecting raw NGS reads from human using IGV. The allele frequency threshold is kept at the default 0.2.

Yet this is apparently "Quality weight allele fraction" (IGV Preferences) and not regular fraction (e.g. A/[A+C+G+T] ).

Where can I find the formula for this calculation?



Login before adding your answer.

Similar Posts
Loading Similar Posts
Powered by the version 2.1