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Convert YAML scipio output to GFF

Hello!!

I'm using Scipio to create a training set of genes. I've followed the pipeline of Scipio and I've got the scipio.yaml output. However, when I try to convert YAML file to GFF format with the yaml2gff.1.4.pl script, the output is only one line:

##gff-version   3

The log message is:

Found 1 YAML entry.
Substitution loop at ~/bin/scipio-1.4/yaml2gff.1.4.pl line 211, <> line 4094556.

Could some of you please enlighten me to try to figure out this problem? Thank you :)

Best wishes,

Yocelyn

genome training annotation

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