Thanks, I saw some papers who manages to use a file names lproks.cgi (http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi) but I can not locate this file anymore. Is it needed to download a full assemble to grab this data per a genome?
bacteria genomes Environment data
Hello. The NCBI genome nclude a summary header
e.g https://www.ncbi.nlm.nih.gov/genome/167?genome_assembly_id=161521 With the line "Environment". Environment: OxygenReq:Facultative, OptimumTemperature:37, TemperatureRange:Mesophilic, Habitat:HostAssociated
I wish to download genomes with a specific Environment filed (e.g OxygenReq:Facultative). Where this data is located? I can not find this data in the bacteria ftp directory.
Thanks.
1 answer
Hello
These are the environmental properties for the given genome assembly. You can not separate the sequenced based on one.
Swati
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