Can IGV visualize clustal format alignment?
I produced a multiple alignment using
mafft --clustalout seq.fasta > align.fa
Is there any tool to help visualize this alignment file? IGV user guide said that a BAM file is required, how could I produce BAM format alignment file? Thank you!
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IGV is not meant to be used to visualize multiple alignment files, maybe you could use the web interface of MAFFT to do your alignement, it will produce a visual output.