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Virtual Alignment program?

Hello,

I need to do an alignment like in the picture alignment

Is there a way to do that automatically ? Currently, I am using MAFFT to align the sequences and then Jalview to view them - do you know of a program to produce alignments like this?

Best regards

sequence alignment
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written by maximilian.mayerhofer • maximilian.mayerhofer

If "like this" means looking like this then it is certainly a result of some post-alignment editing. You may have to do the same as well with your MAFFT alignments.

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written by GenoMax GenoMax

Of course, my question is: is there a pipeline/program that can do that for me? Or do I have to do this by hand?

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written by maximilian.mayerhofer • maximilian.mayerhofer

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