GBS and TASSEL-GBS v2

Dear All

I'm completely new to GBS data. I have some paired-end GBS libs. can I use TASSEL-GBS v2 to handle these PE GBS libs?

Thanks

gbs

• 2,313 views • link

written 8.3 years ago by Sam

0 answers

No answers yet.

More posts like this

Mapping of tag sequences to the reference genome in Tassel 5 GBS v2 Pipeline
written 4.5 years ago by Denis

I have a question regarding appropriate `bowtie2` settings for mapping of tag sequences to the reference genome in `Tassel 5 GBS v2 Pipeline`. According to …
non-integer numReads for differential expression analysis
written 7.8 years ago by Sam

Dear All I want to find predicted lncRNA expression according to RNA-seq data, I prepared a database from all of the predicted lncRNA and then …
prepare a GFF file for MOCK fasta reference
written 8.1 years ago by Sam

Dear Biostars I need your help to handle this problem, I'm working with GBS data and now I have a big list of SNP position …
listing library names
written 8.2 years ago by Sam

Dear all I have a folder which contains the GBS libs, but I need to prepare a list of the available lib with this format. …
Analysis of paired-end GBS data
written 8.5 years ago by Denis

Hi there! I'm working on GBS data analysis of plants with available reference genome. I already tried Tassel 5 GBS v2 pipeline (https://bitbucket.org/tasseladmin/tassel-5-source/wiki/Tassel5GBSv2Pipeline) and it …
calculation of tag count
written 8.6 years ago by jaafari.omid

Hello Dears. This is Omid. I am working on fish population structure using GBS data (Paired end data). I have received my data trimmed and …
Tools that can be used to assembly GBS data
written 8.6 years ago by pinky_pinkpinky •

Dear Users, 1. Can any one suggest some tools that can be used to perform assembly with GBS data (75*1) chemistry. 2. Any tools to …
Tag counting of GBS data
written 8.6 years ago by jaafari.omid

Hello Dears. This is Omid. I am working on fish population structure using GBS data (Paired end data). I have received my data trimmed and …
GBS SNPs calling
written 9.5 years ago by shinken123

Hi all, I am wondering if you could recommend me a pipeline to call SNPs from GBS data. I see two principal alternatives: 1.- Demultiplexing, …
VELVET de novo plant genome, strategy question
written 10.5 years ago by dsoronellas •

Dear community, I'm planning to use **Velvet** to assemble a **plant genome**, but because I'm new to de-novo genome assembly field I have a couple …