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GATK current version downloading fails

I am trying to download GATK latest version from the given link: https://software.broadinstitute.org/gatk/download/index

I have been trying multiple times, but it fails after sumtime. There is no internet issue, as I have downloaded the entire fastq.gz (~6GB) file for RNAseq.

My desktop configuration is: HDD~500GB RAM-7.7GB OS-Ubuntu 16.04LTS, 64bit

software error next-gen sequencing gene
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updated by zhenyisong zhenyisong • written by shuksi1984 • shuksi1984

Use wget --continue *link*.

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written by h.mon h.mon

1 answer

you can try miniconda to mange your software version. GATK4 has already lifted its restriction.

conda install -c bioconda gatk
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written by zhenyisong zhenyisong

Thanks, but tried the other way.

1.Downloaded the zipped file in my local machine through web. 2.Copied the zipped file in server through SCP. 3.Unzipped and installed.

It worked...!

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written by shuksi1984 • shuksi1984

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