I am pruning datasets of varying SNP density using PLINK --indep-pairwise, comparing different r2 cut-offs. The density ranges from the 1000 Genomes phase 3 data …
<p>Hello,</p> <p>I'm starting a new post about the liftover process for SNPs because several questions came into my mind during the work I've done so …
The data should have the MAP file, if not you can explore UCSC Table Browser. http://genome.ucsc.edu/cgi-bin/hgTables
Is this a commercial chip? Are you not able to find the annotations from the vendor?