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Gold standard datasets

Hi

Currently I'm looking to construct the robust genome analysis pipeline. I came across a lot of aligners , variant callers, Structural variant callers and Copy number variation (CNV) callers. But were I can find the raw datasets for all 5 genomes( HG001,HG002,HG003,HG004 and HG005 ) ?

Can any any one provide me the link. Thanks!

genome
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updated by d-cameron d-cameron • written by pinn pinn

Hello pinninti1991reddy!

Please follow up on your questions. See C: Readgroups for a bam file ?

For this reason we have closed your question.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

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written by Ram Ram

thanks for your response

• 1 views • link
written by pinn pinn

What does that mean, OP? Do you intend following up on your past posts?

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written by Ram Ram

Please provide feedback to d-cameron by responding to their answer, and I'll reopen this question. Thank you!

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written by Ram Ram

1 answer

I can find the raw datasets for all 5 genomes

The 'raw' data are physical cell lines. Genome in a Bottle genomes are literally a genome in a bottle that you can test your entire sequencing pipline from sample prep all the way to the end of the bioinformatics pipeline.

That said, there is plenty of reference sequence data at the GiaB website: http://jimb.stanford.edu/giab-resources/

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written by d-cameron d-cameron

Thanks, I find the new benchmark datasets published by zook etal 2018 (Dr.Justin Zook).

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written by pinn pinn

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